These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [GTCCAGTTTCTTAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAAAGACAACCGTAAAATAATACCTCAAACAGGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTTTTGGAAAACGGAATAAATAGTTGACGATTGACAATAAAGAACAAAATGACATTAAAGTGATAGTGAAACTGATAGAAGATAGGTTGATGATGAAAGTTTGATGAGAAAACATGAGAATTTGAAGCGGGAAACTGAGGTCACTATTGATCAGTGAAGATCAGATATTTAGTAGGA] [+] EMBL BG931024 [GTCCAGTTTCTTAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAAAGACAACCGTAAAATAATACCTCAAACAGGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTTTTGGAAAACGGAATAAATAGTTGACGATTGACAATAAAGAACAAAATGACATTAAAGTGATAGTGAAACTGATAGAAGATAGGTTGATGATGAAAGTTTGATGAGAAAACATGAGAATTTGAAGCGGGAAACTGAGGTCACTATTGATCAGTGAAGATCAGATATTTAGTAGGA] consensusID : consensus_1454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence [TTCCAGTCTCTGAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAATCACCACCGTATACTAATACCTCAAACACGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTGGTGGAAAACGGACTATATAGTTGACGATTGACCATCAAAAACTAAACGACGTTCTAGTGATACTGGATCTGATAC] [+] EMBL BG931286 [TTCCAGTCTCTGAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAATCACCACCGTATACTAATACCTCAAACACGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTGGTGGAAAACGGACTATATAGTTGACGATTGACCATCAAAAACTAAACGACGTTCTAGTGATACTGGATCTGATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1454#0 GTCCAGTTTCTTAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAAAGACAACC 60 consensus_1454#1 TTCCAGTCTCTGAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAATCACCACC 60 ****** *** **************************************** ** *** consensus_1454#0 GTAAAATAATACCTCAAACAGGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTTTTG 120 consensus_1454#1 GTATACTAATACCTCAAACACGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTGGTG 120 *** * ************** *********************************** ** consensus_1454#0 GAAAACGGAATAAATAGTTGACGATTGACAATAAAGAACAAAATGACATTAAAGTGATAG 180 consensus_1454#1 GAAAACGGACTATATAGTTGACGATTGACCATCAAAAACTAAACGACGTTCTAGTGATAC 180 ********* ** **************** ** ** *** *** *** ** ******* consensus_1454#0 TGAAACTGATAGAAGATAGGTTGATGATGAAAGTTTGATGAGAAAACATGAGAATTTGAA 240 consensus_1454#1 TGGATCTGATAC------------------------------------------------ 192 ** * ****** consensus_1454#0 GCGGGAAACTGAGGTCACTATTGATCAGTGAAGATCAGATATTTAGTAGGA 291 consensus_1454#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||