cluster # 1458

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Schistosoma mansoni
cluster # 1458 cluster # 1458 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1458#0 length = 556 sequences # 1

consensus_1458#1 length = 395 sequences # 1

consensusID : consensus_1458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [AAATTTTTATTGAATAAATATTACTTTACAAATTAAACATTATCAGGTGTATTGTAAGAGAGCTTTTTGCGTTTGAATTGATGAACACACTGATTGATAGATACACAATGTTTACATTGATTACAATGAAATTTCTTTGCAGGTCTACAACGATTACATTTATCACAGTGTACATAGGTTGGTCCATTTCTAGTGGTGCAACGGTCACATTTAGAACAGTGTAGATTTGTTATGTGCGAATAACGTTGACAAATTTCACAAAACCTGAAACATTTCTCAATTGATTTAGGTGGATGGACCAAGGAAGGAAGTAAACTTGTAAATAAGCGAACAATCGAGTCGCGCCTCCGTCCTCTATTTGAATTATCACCAATTTTATTATTTAAATTCATGTGGTTTTGATCATCACTGATATCACAATCCAATCTTGAGTGGTTTTCGTAAGTGATTTTATAATCCAGCAAGTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCGTTNTCATTTAAACTCTCGC]

[+] EMBL CD076989             [AAATTTTTATTGAATAAATATTACTTTACAAATTAAACATTATCAGGTGTATTGTAAGAGAGCTTTTTGCGTTTGAATTGATGAACACACTGATTGATAGATACACAATGTTTACATTGATTACAATGAAATTTCTTTGCAGGTCTACAACGATTACATTTATCACAGTGTACATAGGTTGGTCCATTTCTAGTGGTGCAACGGTCACATTTAGAACAGTGTAGATTTGTTATGTGCGAATAACGTTGACAAATTTCACAAAACCTGAAACATTTCTCAATTGATTTAGGTGGATGGACCAAGGAAGGAAGTAAACTTGTAAATAAGCGAACAATCGAGTCGCGCCTCCGTCCTCTATTTGAATTATCACCAATTTTATTATTTAAATTCATGTGGTTTTGATCATCACTGATATCACAATCCAATCTTGAGTGGTTTTCGTAAGTGATTTTATAATCCAGCAAGTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCGTTNTCATTTAAACTCTCGC]




>consensus_1458#0
AAATTTTTATTGAATAAATATTACTTTACAAATTAAACATTATCAGGTGTATTGTAAGAG
AGCTTTTTGCGTTTGAATTGATGAACACACTGATTGATAGATACACAATGTTTACATTGA
TTACAATGAAATTTCTTTGCAGGTCTACAACGATTACATTTATCACAGTGTACATAGGTT
GGTCCATTTCTAGTGGTGCAACGGTCACATTTAGAACAGTGTAGATTTGTTATGTGCGAA
TAACGTTGACAAATTTCACAAAACCTGAAACATTTCTCAATTGATTTAGGTGGATGGACC
AAGGAAGGAAGTAAACTTGTAAATAAGCGAACAATCGAGTCGCGCCTCCGTCCTCTATTT
GAATTATCACCAATTTTATTATTTAAATTCATGTGGTTTTGATCATCACTGATATCACAA
TCCAATCTTGAGTGGTTTTCGTAAGTGATTTTATAATCCAGCAAGTTCAAAAATGGGGCA
ATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCGTTN
TCATTTAAACTCTCGC

consensusID : consensus_1458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [TCCAATCTTGAGTGGTTTTNCGTAAGTGATCTTTACGTGTAATAGTATTAGCAACACTTGATTACTTTATAATCCAGCAAGTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCGTTTTCATTTAAACTCTCGCAATTACTCTTAGTAATTTGGAAACTTGAAATATACTGTCTTATTGAATTGCTTAAAAATCTGATCTGGTTCACAATTAGCGATAATGGTGCAGAAAATGGAGGATCACAAAATATGGAGCATTTATCACTAGGTTTTATATTATCCTTCATGAAATGACGAAAATTTTCTTCTTCCATTTGACTGAAGAAAAACCCATTTACCATATTATACCGTGAGAAACG]

[+] EMBL CD187494             [TCCAATCTTGAGTGGTTTTNCGTAAGTGATCTTTACGTGTAATAGTATTAGCAACACTTGATTACTTTATAATCCAGCAAGTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCGTTTTCATTTAAACTCTCGCAATTACTCTTAGTAATTTGGAAACTTGAAATATACTGTCTTATTGAATTGCTTAAAAATCTGATCTGGTTCACAATTAGCGATAATGGTGCAGAAAATGGAGGATCACAAAATATGGAGCATTTATCACTAGGTTTTATATTATCCTTCATGAAATGACGAAAATTTTCTTCTTCCATTTGACTGAAGAAAAACCCATTTACCATATTATACCGTGAGAAACG]




>consensus_1458#1
TCCAATCTTGAGTGGTTTTNCGTAAGTGATCTTTACGTGTAATAGTATTAGCAACACTTG
ATTACTTTATAATCCAGCAAGTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGAAG
AAAAATGGGAGAACTAGCAGGTATGGAATATCGTTTTCATTTAAACTCTCGCAATTACTC
TTAGTAATTTGGAAACTTGAAATATACTGTCTTATTGAATTGCTTAAAAATCTGATCTGG
TTCACAATTAGCGATAATGGTGCAGAAAATGGAGGATCACAAAATATGGAGCATTTATCA
CTAGGTTTTATATTATCCTTCATGAAATGACGAAAATTTTCTTCTTCCATTTGACTGAAG
AAAAACCCATTTACCATATTATACCGTGAGAAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1458#0      AAATTTTTATTGAATAAATATTACTTTACAAATTAAACATTATCAGGTGTATTGTAAGAG 60
consensus_1458#1      ------------------------------------------------------------
                                                                                  

consensus_1458#0      AGCTTTTTGCGTTTGAATTGATGAACACACTGATTGATAGATACACAATGTTTACATTGA 120
consensus_1458#1      ------------------------------------------------------------
                                                                                  

consensus_1458#0      TTACAATGAAATTTCTTTGCAGGTCTACAACGATTACATTTATCACAGTGTACATAGGTT 180
consensus_1458#1      -TCCAATCTTGAGTGGTTTTNCGTAAGTGATCTTTACGTGTAATAGTATTAGCAACACTT 59
                       * ****      *  **    **     *   **** * **  *   *   **    **

consensus_1458#0      GGTCCATTTCTAGTGGTGCAACGGTCACATTTAGAACAGTGTAGATTTGTTATGTG-CGA 239
consensus_1458#1      GATTACTTTATAATCCAGCAA-GTTCAAAAATGGGGCAATCTTCTGCAGCTTTTTCTCGA 118
                      * *   *** ** *   **** * *** *  * *  ** * *      * * * *  ***

consensus_1458#0      ATAACGTTGACAAATTTCACAAAACCTGAAACAT--TTCTCAATTGATTTAGGTGGATGG 297
consensus_1458#1      AGAAAAATGGGAGAACTAGCAGG-TATGGAATATCGTTTTCATTTAAACTCTCGCAATTA 177
                      * **   **  * *  *  **     ** ** **  ** *** ** *  *      **  

consensus_1458#0      ACCAAGGAAGGAAGTAAACTTGTAAATAAGCGAACAATCGAGTCGCGCCTCCGTCCTCTA 357
consensus_1458#1      CTCTTAGTAATTTGGAAACTTGAAATATACTGTCTTATTGAATTGC-------------- 223
                        *   * *    * ******* **   *  *    ** ** * **              

consensus_1458#0      TTTGAATTATCACCAATTTTATTATTTAAATTCATGTGGTTTTGATCATCACTGATATCA 417
consensus_1458#1      TTAAAAATCTGATCTGGTTCACAATTAGCGATAAT--GGTGCAGAAAATGGAGGA--TCA 279
                      **  ** * * * *   ** *  ***     * **  ***   **  **    **  ***

consensus_1458#0      CAATCCAATCTTGAGTGGTTTTCGTAAGTGATTTTATAATCCAGCAAGTTCAAAAATGGG 477
consensus_1458#1      CAA---AATATGGAGCATTTATCACTAGGTTTTATATTATCCTTCATG-----AAATGAC 331
                      ***   *** * ***   ** **   **   ** *** ****  ** *     *****  

consensus_1458#0      GCAATCTTCTGCAGCTTTTTCTCGAAGAAAAATGGGAGAACTAGCAGGTATGGAATATCG 537
consensus_1458#1      GAAAATTTT-----CTTCTTCCATTTGACTGAAGAAAAACCCATTTACCATATTATACCG 386
                      * **  **      *** ***     **   * *  * * * *      **   *** **

consensus_1458#0      TTNTCATTTAAACTCTCGC 556
consensus_1458#1      TGAGAAACG---------- 395
                      *    *