These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [ATGTAGGCCGTCATAATTTGATTAGAACGGCTTTACACTAGCATATTGTGCAAGTACTTTGTGACATTCTGTCCATTTACCAGGTATATCCGTCTTGGGTTTTCGTTACTATAGATCAGTTCGTCACAATTCCATGATGTTATCTTATTTGCTTTCACCTAGTAGGGAGGGTAATTATGTTAAGTAATCACCATGTGAACACCTTAATGGTTGGTATATTCCCCTTCTCGTCCGTTAAAAAATTACGGTAGGATTCATGCGATGAAAAGATCTGACTTGAGTCTAACTGATCGAAAAACCCAATGGATGGAGATGAATGACATAATCACTGGCAATAAACAGTGTTACATAGTATGTTGCAATATTGCATGCTCTGTGTTAGTAATCCATTAGAGATTAACTCACTACTCTGCAAAAGTTATTTGTATCAATACATAATTTATTTGATTTCTTGTATTTTAGATGACAGTCGAATTACATTTGACTCTCCTCTCTTTNTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATATNTG] [+] EMBL CD131358 [ATGTAGGCCGTCATAATTTGATTAGAACGGCTTTACACTAGCATATTGTGCAAGTACTTTGTGACATTCTGTCCATTTACCAGGTATATCCGTCTTGGGTTTTCGTTACTATAGATCAGTTCGTCACAATTCCATGATGTTATCTTATTTGCTTTCACCTAGTAGGGAGGGTAATTATGTTAAGTAATCACCATGTGAACACCTTAATGGTTGGTATATTCCCCTTCTCGTCCGTTAAAAAATTACGGTAGGATTCATGCGATGAAAAGATCTGACTTGAGTCTAACTGATCGAAAAACCCAATGGATGGAGATGAATGACATAATCACTGGCAATAAACAGTGTTACATAGTATGTTGCAATATTGCATGCTCTGTGTTAGTAATCCATTAGAGATTAACTCACTACTCTGCAAAAGTTATTTGTATCAATACATAATTTATTTGATTTCTTGTATTTTAGATGACAGTCGAATTACATTTGACTCTCCTCTCTTTNTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATATNTG] consensusID : consensus_1459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [ACAGACCGCGTTCCTTGAAGGTGGTGCTGATTTTCTCTATGACAGTCGAATTACATTTGACTCTCCTCACTTTTTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATATTTGTTTCGAGAAAAATGGATATTTACCGGGCTGTAAAGAATTATCTTAACAGAATGATCTCAGTAGCTGATGGTAGCATGAAAGTATTAATGCTTGATCAAGAAACATTGAAAATAGTCAGTGTGGTTTGTTCAATGTCTGAAATTATGAGATATGATGTTTATTTAATTGAACGTATTGATGCACCGCGTGAATCTTTGGAACATTTACGTTGTATTTGTTTCTTAAGACCAACAAAAGAGAATATTAATTTTTTATCTAAAGAATTAAGGAAACCAAATTATTTTTCCTACCACTTATTTTTCAGTCATTCCATAACTAAGCAGTTACTGAAACAATTAGCAGAAGCTGATGAAAATGAATTAG] [+] EMBL CD183286 [ACAGACCGCGTTCCTTGAAGGTGGTGCTGATTTTCTCTATGACAGTCGAATTACATTTGACTCTCCTCACTTTTTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATATTTGTTTCGAGAAAAATGGATATTTACCGGGCTGTAAAGAATTATCTTAACAGAATGATCTCAGTAGCTGATGGTAGCATGAAAGTATTAATGCTTGATCAAGAAACATTGAAAATAGTCAGTGTGGTTTGTTCAATGTCTGAAATTATGAGATATGATGTTTATTTAATTGAACGTATTGATGCACCGCGTGAATCTTTGGAACATTTACGTTGTATTTGTTTCTTAAGACCAACAAAAGAGAATATTAATTTTTTATCTAAAGAATTAAGGAAACCAAATTATTTTTCCTACCACTTATTTTTCAGTCATTCCATAACTAAGCAGTTACTGAAACAATTAGCAGAAGCTGATGAAAATGAATTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1459#0 ATGTAGGCCGTCATAATTTGAT-TAGAACGGCTTTACACTAGCATATTGTGCAAGTACTT 59 consensus_1459#1 --ACAGACCGCGTTCCTTGAAGGTGGTGCTGATTTTCTCTATGACA--GTCGAATTACAT 56 ** *** * ** * * * * * *** * *** * * ** ** *** * consensus_1459#0 TGTGACATTCTGTCCATTTACCAGGTATATCCGTC-TTGGGTTTTCGTTACTATAGATCA 118 consensus_1459#1 TTGACTCTCCTCACTTTTTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTTGGATAT 116 * * ** * *** *** * *** ** * * ** * * * *** consensus_1459#0 GTTCGTCACAATTCCATGATGTTATCTTATTTGCTTTCACCTAG-TAGGGAGGGTAATTA 177 consensus_1459#1 TTGTTTCGAGAAAAATGGATATTTACCGGGCTGTAAAGAATTATCTTAACAGAATGATCT 176 * ** * *** ** * ** * ** * ** * ** consensus_1459#0 TGTTAAGTAATCACCATGTGAACACCTTAATGGTTGGTATATTCCCCTTCTCGTCCGTTA 237 consensus_1459#1 CAGTAGCTGATGGTAGCATGAAAGTATTAATGCTTGATCAAGAAACATTGAAAATAGTCA 236 ** * ** **** ****** *** * * * ** ** * consensus_1459#0 AAAAATTACGGTAGGATTCATGCGATGAAAAGATCTGACTTGAGTCTAACTGATCGAAA- 296 consensus_1459#1 GTGTGGT-TTGTTCAATGTCTGAAATTATGAGATATGATGTTTATTTAATTGAACGTATT 295 * ** ** ** ** * **** *** * * *** *** ** * consensus_1459#0 AACCCAATGGATGGAGATGAATGACATAATCACTGGCAATAAACAGTGTTACATAGTATG 356 consensus_1459#1 GATGCACCGCGTGAATCTTTGGAACATTTACGTTGTATTTGTTTCTTAAGAC-CAACAAA 354 * ** * ** * * **** * ** * * ** * * consensus_1459#0 TTGCAATATTGCATGCTCTGTGTTAGTAATCCATTAGAGATTAACTCACTACTCTGCAAA 416 consensus_1459#1 AGAGAATATTA-ATTTTTTATCTAAAGAATTAA--GGAAACCAAATTATTTTTCC-TACC 410 ****** ** * * * * * *** * ** * ** * * * ** * consensus_1459#0 AGTTATTTGT--ATCAATACATAATTTATTTGATTTCTTGTATTTTAGATGACAGTCGAA 474 consensus_1459#1 ACTTATTTTTCAGTCATTCCATAACT-AAGCAGTTACTGAAACAATTAGCAGAAGCTGA- 468 * ****** * *** * ***** * * ** ** * * ** ** consensus_1459#0 TTACATTTGACTCTCCTCTCTTTNTTTCAGTTTTATATCTCATCGTAATTAGAGAAGTTT 534 consensus_1459#1 TGAAAATGAATTAG---------------------------------------------- 482 * * * * * * consensus_1459#0 GGATATNTG 543 consensus_1459#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||