cluster # 1467

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Schistosoma mansoni
cluster # 1467 cluster # 1467 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1467#0 length = 370 sequences # 1

consensus_1467#1 length = 328 sequences # 1

consensusID : consensus_1467#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [CTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAAAGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGTCTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCAGGCCAACGAAATAAATCATTTAGAATAGTATCCTTTGATGATTTGACCAAATTTATTTTCGACCGATAATGTTGACTGGTTAGCGCTGTAGTTGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAAAACTGGTATTATCAGTGTTAGTAGTATTGTGGTTACTATGATTGTGATCGTCATCCAAATGACAAGTACCATTTGC]

[+] EMBL CD124740             [CTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAAAGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGTCTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCAGGCCAACGAAATAAATCATTTAGAATAGTATCCTTTGATGATTTGACCAAATTTATTTTCGACCGATAATGTTGACTGGTTAGCGCTGTAGTTGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAAAACTGGTATTATCAGTGTTAGTAGTATTGTGGTTACTATGATTGTGATCGTCATCCAAATGACAAGTACCATTTGC]




>consensus_1467#0
CTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAAAGTTT
TGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGTCTCTC
TTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCAGGCCAACGAAATAAATCATTTA
GAATAGTATCCTTTGATGATTTGACCAAATTTATTTTCGACCGATAATGTTGACTGGTTA
GCGCTGTAGTTGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAAAACTGG
TATTATCAGTGTTAGTAGTATTGTGGTTACTATGATTGTGATCGTCATCCAAATGACAAG
TACCATTTGC

consensusID : consensus_1467#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [AAATTCTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAAAGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGTCTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCGGGCCAACGAAATAAATCATTTAGAATAGTATCCTTTGATGATTTGACCAAATTGTTTTCGACCGATAATGTTGACTGGTTAGCGCTGTAGATGGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAAAACTGGGATTTTATTAACTACCATAATAC]

[+] EMBL BE431226             [AAATTCTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAAAGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGTCTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCGGGCCAACGAAATAAATCATTTAGAATAGTATCCTTTGATGATTTGACCAAATTGTTTTCGACCGATAATGTTGACTGGTTAGCGCTGTAGATGGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAAAACTGGGATTTTATTAACTACCATAATAC]




>consensus_1467#1
AAATTCTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAA
AGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGT
CTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCGGGCCAACGAAATAAATC
ATTTAGAATAGTATCCTTTGATGATTTGACCAAATTGTTTTCGACCGATAATGTTGACTG
GTTAGCGCTGTAGATGGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAAA
ACTGGGATTTTATTAACTACCATAATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1467#0      -----CTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAA 55
consensus_1467#1      AAATTCTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAA 60
                           *******************************************************

consensus_1467#0      AGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGT 115
consensus_1467#1      AGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGT 120
                      ************************************************************

consensus_1467#0      CTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCAGGCCAACGAAATAAATC 175
consensus_1467#1      CTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCGGGCCAACGAAATAAATC 180
                      ****************************************** *****************

consensus_1467#0      ATTTAGAATAGTATCCTTTGATGATTTGACCAAATTTATTTTCGACCGATAATGTTGACT 235
consensus_1467#1      ATTTAGAATAGTATCCTTTGATGATTTGACCAAATT-GTTTTCGACCGATAATGTTGACT 239
                      ************************************  **********************

consensus_1467#0      GGTTAGCGCTGTAGTTGG-CAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAA 294
consensus_1467#1      GGTTAGCGCTGTAGATGGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAA 299
                      ************** *** *****************************************

consensus_1467#0      AACTGGTATT--ATCAGTGTTAGTAGTATTGTGGTTACTATGATTGTGATCGTCATCCAA 352
consensus_1467#1      AACTGGGATTTTATTAACTACCATAATAC------------------------------- 328
                      ****** ***  ** *       ** **                                

consensus_1467#0      ATGACAAGTACCATTTGC 370
consensus_1467#1      ------------------