These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [ATTCAATTTTTAAACATATAAGGATTACAGACAACTTTTCTAGTGGGATATTAGTTTTTTAATGAAACACCAGCTTAGGCAGCAAAGATATAAAGATATTTGGTAACAATCTATATAGAAAAACAAAATACTTTTGAAATATTTTTAATAAATCACAGCTATTAAGCTGGTAGCAGGTGGGAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTACATAGGATGAGCAATGAGTACAGAAAGACTCGTATACAGGTAAAGTATGCATTCATACTTATGGGTAAACAAATGCCAATGGTCGTGATAAAATTATCTAATAATGTCAAATATTAAATTGACTGGCAAAAATCACTTTAAGAAACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAAGATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGCACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTTGAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGAAACCACATAAGAAGCGAAGAAGTCTTTTA] [+] EMBL BF936841 [ATTCAATTTTTAAACATATAAGGATTACAGACAACTTTTCTAGTGGGATATTAGTTTTTTAATGAAACACCAGCTTAGGCAGCAAAGATATAAAGATATTTGGTAACAATCTATATAGAAAAACAAAATACTTTTGAAATATTTTTAATAAATCACAGCTATTAAGCTGGTAGCAGGTGGGAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTACATAGGATGAGCAATGAGTACAGAAAGACTCGTATACAGGTAAAGTATGCATTCATACTTATGGGTAAACAAATGCCAATGGTCGTGATAAAATTATCTAATAATGTCAAATATTAAATTGACTGGCAAAAATCACTTTAAGAAACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAAGATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGCACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTTGAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGAAACCACATAAGAAGCGAAGAAGTCTTTTA] consensusID : consensus_1473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [AATTTCCTATAAATNANAGGTATTAAGNTGGTAGNAGGTGGGAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTAATAGGATGAGNAATGAGTANAGAAAGAATGGTATAGAGGTAAAGTATGGATTTATANTTATGGGTAAANAAATGGNAATGGTGGTGATAAAATTATTTAATAATGTNAAATATTAAATTGATTGTTTAAAATNACCCCCCCCACACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAAGATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGCACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTTGAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGAAACCACATAAGAAGCGAAGAAGTCTTTTAATCCCTGTCCAAGAGCAGAGGAGTCACAAATAGCATTGGGAC] [+] EMBL CD077078 [AATTTCCTATAAATNANAGGTATTAAGNTGGTAGNAGGTGGGAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTAATAGGATGAGNAATGAGTANAGAAAGAATGGTATAGAGGTAAAGTATGGATTTATANTTATGGGTAAANAAATGGNAATGGTGGTGATAAAATTATTTAATAATGTNAAATATTAAATTGATTGTTTAAAATNACCCCCCCCACACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAAGATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGCACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTTGAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGAAACCACATAAGAAGCGAAGAAGTCTTTTAATCCCTGTCCAAGAGCAGAGGAGTCACAAATAGCATTGGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1473#0 ATTCAATTTTTAAACATATAAGGATTACAGACAACTTTTCTAGTGGGATATTAGTTTTTT 60 consensus_1473#1 ------------------------------------------------------------ consensus_1473#0 AATGAAACACCAGCTTAGGCAGCAAAGATATAAAGATATTTGGTAACAATCTATATAGAA 120 consensus_1473#1 ------------------------------------------------------------ consensus_1473#0 AAACAAAATACTTTTGAAATATTTTTAATAAATCACAGCTATTAAGCTGGTAGCAGGTGG 180 consensus_1473#1 -------------------AATTTCCTATAAATNANAGGTATTAAGNTGGTAGNAGGTGG 41 **** ****** * ** ******* ****** ****** consensus_1473#0 GAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTACATAGGATGAGCAATGAGTAC 240 consensus_1473#1 GAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTA-ATAGGATGAGNAATGAGTAN 100 *************************************** ********** ******** consensus_1473#0 AGAAAGACTCGTATACAGGTAAAGTATGCATTCATACTTATGGGTAAACAAATGCCAATG 300 consensus_1473#1 AGAAAGAATGGTATAGAGGTAAAGTATGGATTTATANTTATGGGTAAANAAATGGNAATG 160 ******* * ***** ************ *** *** *********** ***** **** consensus_1473#0 GTCGTGATAAAATTATCTAATAATGTCAAATATTAAATTGACTGGCAAAAATCACTTTAA 360 consensus_1473#1 GTGGTGATAAAATTATTTAATAATGTNAAATATTAAATTGATTGTTTAAAATNACCCCCC 220 ** ************* ********* ************** ** ***** ** consensus_1473#0 GAA-ACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAA 419 consensus_1473#1 CCACACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAA 280 * ******************************************************** consensus_1473#0 GATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGC 479 consensus_1473#1 GATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGC 340 ************************************************************ consensus_1473#0 ACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTT 539 consensus_1473#1 ACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTT 400 ************************************************************ consensus_1473#0 GAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGA 599 consensus_1473#1 GAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGA 460 ************************************************************ consensus_1473#0 AACCACATAAGAAGCGAAGAAGTCTTTTA------------------------------- 628 consensus_1473#1 AACCACATAAGAAGCGAAGAAGTCTTTTAATCCCTGTCCAAGAGCAGAGGAGTCACAAAT 520 ***************************** consensus_1473#0 ----------- consensus_1473#1 AGCATTGGGAC 531 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||