These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [TTGAAATCATTATTGTAGATACTAGTGGTCGACACAGACAAGAAGATTCATTATTTGAGGAAATGCTTCAAGTTTCAAATGCTATTGAACCAGATCATGTTATCTACGTCTTAGATGCTTCTATAGGTCAAGCTTGTGAAGCTCAAGCTAGTGCATTCAAAGCAAAAGTTGATGTATCATCAGTTATTGTGACAAAACTTGATGGTCATGCAAAAGGTGGTGGCGCTTTAAGCGCAGTTGCAGCTACACATAGTCCAATTACATTTATTGGAACTGGTGAACATGTAGAAGATTTTGAACAATTTCGAGTTCAACCATTTGTACAAAAATTATTAGGTTTAGGTGATTTAGAAGGTTTAGTGGAACGTGTTACAGAATTAAAATTAGATGAGAATGAAGAGTTAGTGAAAAAACTAAAACAAGGTGTATTCACATTACGTAATATGTATGAACAATTTCAAAATATTTTAAAAATTGGTTCATTTTCACAAGTTCTATCAGCTATACCAGGTCTTGGACAAGATTTACTTGCTAATGATCAAGAAAGTCATCGACGTTTAAAACGTCTTATGACAATTATGGATAGTATGAATGATTATGAGTTGGACTCGGATGAAGGAGGACGTCTATTTAACCGACAACCTGGACGAACATTACGAGTTGCTCGTGGAGCAGGTGTTAGTC] [+] EMBL BF936572 [TTGAAATCATTATTGTAGATACTAGTGGTCGACACAGACAAGAAGATTCATTATTTGAGGAAATGCTTCAAGTTTCAAATGCTATTGAACCAGATCATGTTATCTACGTCTTAGATGCTTCTATAGGTCAAGCTTGTGAAGCTCAAGCTAGTGCATTCAAAGCAAAAGTTGATGTATCATCAGTTATTGTGACAAAACTTGATGGTCATGCAAAAGGTGGTGGCGCTTTAAGCGCAGTTGCAGCTACACATAGTCCAATTACATTTATTGGAACTGGTGAACATGTAGAAGATTTTGAACAATTTCGAGTTCAACCATTTGTACAAAAATTATTAGGTTTAGGTGATTTAGAAGGTTTAGTGGAACGTGTTACAGAATTAAAATTAGATGAGAATGAAGAGTTAGTGAAAAAACTAAAACAAGGTGTATTCACATTACGTAATATGTATGAACAATTTCAAAATATTTTAAAAATTGGTTCATTTTCACAAGTTCTATCAGCTATACCAGGTCTTGGACAAGATTTACTTGCTAATGATCAAGAAAGTCATCGACGTTTAAAACGTCTTATGACAATTATGGATAGTATGAATGATTATGAGTTGGACTCGGATGAAGGAGGACGTCTATTTAACCGACAACCTGGACGAACATTACGAGTTGCTCGTGGAGCAGGTGTTAGTC] consensusID : consensus_1482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [GACGAACATTACGAGTTGCTCGTGGAGCAGGTGTTAGTCAAGCTGAAGTAAAACTTCTATTAACTCAACATAATAAATCTTATATGGTTGTCAAAAAAATGGGTGGTATCAAAGGTCTATTTCAAACTGGATCTAAAAGTGGAGCTATGGGTGGAATTGGTGGTGGTCCTGGTGGAGTTGGAAGTGGGGGCGGAGCAGGAGGTAGTGGGAATACACCAAGCCTAGCTGAAATGGCTGCAGCTTCACGATCTGTCAGTGCAGGTCAAATGGCAAAATTAAATCAATCAATGGCAAAAGTACTTGATCCA] [+] EMBL CD131405 [GACGAACATTACGAGTTGCTCGTGGAGCAGGTGTTAGTCAAGCTGAAGTAAAACTTCTATTAACTCAACATAATAAATCTTATATGGTTGTCAAAAAAATGGGTGGTATCAAAGGTCTATTTCAAACTGGATCTAAAAGTGGAGCTATGGGTGGAATTGGTGGTGGTCCTGGTGGAGTTGGAAGTGGGGGCGGAGCAGGAGGTAGTGGGAATACACCAAGCCTAGCTGAAATGGCTGCAGCTTCACGATCTGTCAGTGCAGGTCAAATGGCAAAATTAAATCAATCAATGGCAAAAGTACTTGATCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1482#0 TTGAAATCATTATTGTAGATACTAGTGGTCGACACAGACAAGAAGATTCATTATTTGAGG 60 consensus_1482#1 ------------------------------------------------------------ consensus_1482#0 AAATGCTTCAAGTTTCAAATGCTATTGAACCAGATCATGTTATCTACGTCTTAGATGCTT 120 consensus_1482#1 -----------------------------------------------------GACGAAC 7 ** * consensus_1482#0 -CTATAGGTCAAGCTTGTGAAGCTCAAGCTAGTGCATTCAAAGCAAAAGTTGATGTATCA 179 consensus_1482#1 ATTACGAGTT--GCTCGTGGAGCAGGTGTTAGTCAAGCTGAAGTAAAACTTC---TATTA 62 ** ** *** *** *** * **** * *** **** ** *** * consensus_1482#0 TCAGTTATTGTGACAAAACTTG-ATGGTCATGCAAAAGGTGG-TGGCGCTTTAAGCGCAG 237 consensus_1482#1 AC--TCAACATAATAAATCTTATATGGTTGTCAAAAAAATGGGTGGTATCAAAGGTCTAT 120 * * * * * *** *** ***** * **** *** *** * * * consensus_1482#0 TTGCAGCTACACATAGTCCAATTACATTTATTGGAACTGGTGAACATGTAGAAGATTTTG 297 consensus_1482#1 TTCAAACTGGATCTAA---AAGTGGAGCTATGGG------TGGAATTGGTGGTGGTCCTG 171 ** * ** * ** ** * * *** ** ** * ** * * * ** consensus_1482#0 AACAATTTCGAGTTCAACCATTTGTACAAAAATTATTAGGTTTAGGTGATTTAGAAGGTT 357 consensus_1482#1 GTGGAGTTGGAAGTGGG--GGCGGAGCAGGAGGTAGTGGG-------AATACACCAAGCC 222 * ** ** * * ** * ** * ** ** * * * consensus_1482#0 TAGTGGAACGTGTTACAGAATTAAAATTAGATGAGAATGAAGAGTTAGTGAAAAAACTAA 417 consensus_1482#1 TAGCTGAAATGGCTGCAGCTTCACGATC---TGTCAGTGCAGGTCAAATGGCAAAATTAA 279 *** *** * * *** * * ** ** * ** ** * ** **** *** consensus_1482#0 AACAAGGTGTATTCACATTACGTAATATGTATGAACAATTTCAAAATATTTTAAAAATTG 477 consensus_1482#1 ATCAATCAATGGCAAAAGTACTTGATCCA------------------------------- 308 * *** * * * *** * ** consensus_1482#0 GTTCATTTTCACAAGTTCTATCAGCTATACCAGGTCTTGGACAAGATTTACTTGCTAATG 537 consensus_1482#1 ------------------------------------------------------------ consensus_1482#0 ATCAAGAAAGTCATCGACGTTTAAAACGTCTTATGACAATTATGGATAGTATGAATGATT 597 consensus_1482#1 ------------------------------------------------------------ consensus_1482#0 ATGAGTTGGACTCGGATGAAGGAGGACGTCTATTTAACCGACAACCTGGACGAACATTAC 657 consensus_1482#1 ------------------------------------------------------------ consensus_1482#0 GAGTTGCTCGTGGAGCAGGTGTTAGTC 684 consensus_1482#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||