These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [TATAGTATCGCCAAGCACTGTGCCGATGACCTACTGTGAAGTTCATAATAATGCCGCACAATACACATATGAGATCCCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAATTTAATAAATAATGGCTTCGACGAACTCACCCCAGATGCATCAGATTCAACAGATAATAATCTATCTCCTGCTTCTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATATATCATCTGATAATGTAGTCTATCAACCATTACAGGGTTTCAATACATACTATAATGGATCCTCCGT] [+] EMBL BG931293 [TATAGTATCGCCAAGCACTGTGCCGATGACCTACTGTGAAGTTCATAATAATGCCGCACAATACACATATGAGATCCCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAATTTAATAAATAATGGCTTCGACGAACTCACCCCAGATGCATCAGATTCAACAGATAATAATCTATCTCCTGCTTCTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATATATCATCTGATAATGTAGTCTATCAACCATTACAGGGTTTCAATACATACTATAATGGATCCTCCGT] consensusID : consensus_1496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [TATAATATCTCCATGCACTGTGGCGATGACCTACTGTGAAGTTCATAATAATGCCGCACAATACAAATATGACATTTCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAATTTAATAAATAATGGCTTCGACGAACTCACTTCAGTTTCATCACATTCAACAGATAATAATCTTTCTCCTGCTTTTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATATATCATCTGAAAATGTAGTCTATAAACCATTACACGGTTTTAGTAAATACTATAATGGA] [+] EMBL BG931302 [TATAATATCTCCATGCACTGTGGCGATGACCTACTGTGAAGTTCATAATAATGCCGCACAATACAAATATGACATTTCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAATTTAATAAATAATGGCTTCGACGAACTCACTTCAGTTTCATCACATTCAACAGATAATAATCTTTCTCCTGCTTTTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATATATCATCTGAAAATGTAGTCTATAAACCATTACACGGTTTTAGTAAATACTATAATGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1496#0 TATAGTATCGCCAAGCACTGTGCCGATGACCTACTGTGAAGTTCATAATAATGCCGCACA 60 consensus_1496#1 TATAATATCTCCATGCACTGTGGCGATGACCTACTGTGAAGTTCATAATAATGCCGCACA 60 **** **** *** ******** ************************************* consensus_1496#0 ATACACATATGAGATCCCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAA 120 consensus_1496#1 ATACAAATATGACATTTCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAA 120 ***** ****** ** ******************************************* consensus_1496#0 TTTAATAAATAATGGCTTCGACGAACTCACCCCAGATGCATCAGATTCAACAGATAATAA 180 consensus_1496#1 TTTAATAAATAATGGCTTCGACGAACTCACTTCAGTTTCATCACATTCAACAGATAATAA 180 ****************************** *** * ***** **************** consensus_1496#0 TCTATCTCCTGCTTCTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATAT 240 consensus_1496#1 TCTTTCTCCTGCTTTTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATAT 240 *** ********** ********************************************* consensus_1496#0 ATCATCTGATAATGTAGTCTATCAACCATTACAGGGTTTCAATACATACTATAATGGATC 300 consensus_1496#1 ATCATCTGAAAATGTAGTCTATAAACCATTACACGGTTTTAGTAAATACTATAATGGA-- 298 ********* ************ ********** ***** * ** ************* consensus_1496#0 CTCCGT 306 consensus_1496#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||