cluster # 152

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Schistosoma mansoni
cluster # 152 cluster # 152 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_152#0 length = 349 sequences # 1

consensus_152#1 length = 214 sequences # 1

consensusID : consensus_152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [CTTTATTTTATAAGAAAAACAAAGGCCCGAAACCTCGGGTTCCCCAAATTTAAATAACTTTTAATAATCTTTTTATCCATGAACTTTGGTTTTTAGTCCTAATAATCAAATTTCAAAAAGGAAAAATTTTTGCAAAAAAAAAAATATTTCAAAGCTTAACGATTTTTTTTGACCCATGGAACCCTGAAATTGGGGTGTTTTTTCAAAAAACAGGGAACACCGTTTTAGGGCCCCGCCGAAAAAAAATTTTCCTATAAGGTCCCCCCGGGAAATCCATTTTCAATCGATTTTCGTTAGAGTTTTTAAATTACCGGAAAATTCACCGTTAAATAAAGGGATTTTGGGGGGG]

[+] EMBL CD074496             [CTTTATTTTATAAGAAAAACAAAGGCCCGAAACCTCGGGTTCCCCAAATTTAAATAACTTTTAATAATCTTTTTATCCATGAACTTTGGTTTTTAGTCCTAATAATCAAATTTCAAAAAGGAAAAATTTTTGCAAAAAAAAAAATATTTCAAAGCTTAACGATTTTTTTTGACCCATGGAACCCTGAAATTGGGGTGTTTTTTCAAAAAACAGGGAACACCGTTTTAGGGCCCCGCCGAAAAAAAATTTTCCTATAAGGTCCCCCCGGGAAATCCATTTTCAATCGATTTTCGTTAGAGTTTTTAAATTACCGGAAAATTCACCGTTAAATAAAGGGATTTTGGGGGGG]




>consensus_152#0
CTTTATTTTATAAGAAAAACAAAGGCCCGAAACCTCGGGTTCCCCAAATTTAAATAACTT
TTAATAATCTTTTTATCCATGAACTTTGGTTTTTAGTCCTAATAATCAAATTTCAAAAAG
GAAAAATTTTTGCAAAAAAAAAAATATTTCAAAGCTTAACGATTTTTTTTGACCCATGGA
ACCCTGAAATTGGGGTGTTTTTTCAAAAAACAGGGAACACCGTTTTAGGGCCCCGCCGAA
AAAAAATTTTCCTATAAGGTCCCCCCGGGAAATCCATTTTCAATCGATTTTCGTTAGAGT
TTTTAAATTACCGGAAAATTCACCGTTAAATAAAGGGATTTTGGGGGGG

consensusID : consensus_152#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 214
fasta sequence

                              [CTTTATTTTATAAGAAAAACAAAGGCCCGAAACCTCCGGTCCCCCAAATTTAAAAACCTTTTAATAATCTCTTTTTCCAGGACCTTTGGTTTTTAGCCCTAAAAATCAATTTTCAAAAAGGAAAAATTTTTGCAAAAAAAAAAATATTTCAAAGCTTACCGTTTTTTTTGGACCCTTGGACCCCTGAAATTGGGGGGTTTTTTCAAAAAACAGG]

[+] EMBL CD074319             [CTTTATTTTATAAGAAAAACAAAGGCCCGAAACCTCCGGTCCCCCAAATTTAAAAACCTTTTAATAATCTCTTTTTCCAGGACCTTTGGTTTTTAGCCCTAAAAATCAATTTTCAAAAAGGAAAAATTTTTGCAAAAAAAAAAATATTTCAAAGCTTACCGTTTTTTTTGGACCCTTGGACCCCTGAAATTGGGGGGTTTTTTCAAAAAACAGG]




>consensus_152#1
CTTTATTTTATAAGAAAAACAAAGGCCCGAAACCTCCGGTCCCCCAAATTTAAAAACCTT
TTAATAATCTCTTTTTCCAGGACCTTTGGTTTTTAGCCCTAAAAATCAATTTTCAAAAAG
GAAAAATTTTTGCAAAAAAAAAAATATTTCAAAGCTTACCGTTTTTTTTGGACCCTTGGA
CCCCTGAAATTGGGGGGTTTTTTCAAAAAACAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_152#0      CTTTATTTTATAAGAAAAACAAAGGCCCGAAACCTCGGGTTCCCCAAATTTAAATAACTT 60
consensus_152#1      CTTTATTTTATAAGAAAAACAAAGGCCCGAAACCTCCGGTCCCCCAAATTTAAAAACCTT 60
                     ************************************ *** ************* * ***

consensus_152#0      TTAATAATCTTTTTATCCATGAACTTTGGTTTTTAGTCCTAATAATCAAATTTCAAAAAG 120
consensus_152#1      TTAATAATCTCTTTTTCCAGGACCTTTGGTTTTTAGCCCTAAAAATCAATTTTCAAAAAG 120
                     ********** *** **** ** ************* ***** ****** **********

consensus_152#0      GAAAAATTTTTGCAAAAAAAAAAATATTTCAAAGCTTAACGATTTTTTTTGACCCATGGA 180
consensus_152#1      GAAAAATTTTTGCAAAAAAAAAAATATTTCAAAGCTTACCGTTTTTTTTGGACCCTTGGA 180
                     ************************************** ** ******* ***** ****

consensus_152#0      ACCCTGAAATTGGGGTGTTTTTTCAAAAAACAGGGAACACCGTTTTAGGGCCCCGCCGAA 240
consensus_152#1      CCCCTGAAATTGGGGGGTTTTTTCAAAAAACAGG-------------------------- 214
                      ************** ******************                          

consensus_152#0      AAAAAATTTTCCTATAAGGTCCCCCCGGGAAATCCATTTTCAATCGATTTTCGTTAGAGT 300
consensus_152#1      ------------------------------------------------------------
                                                                                 

consensus_152#0      TTTTAAATTACCGGAAAATTCACCGTTAAATAAAGGGATTTTGGGGGGG 349
consensus_152#1      -------------------------------------------------