cluster # 1528

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Schistosoma mansoni
cluster # 1528 cluster # 1528 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1528#0 length = 290 sequences # 1

consensus_1528#1 length = 281 sequences # 1

consensusID : consensus_1528#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [ATCTACAGTAGGTACACCTAATTGCGATGATAATAATGGTCCTATTGTAGAACCACAATGTATATCTTGTCTTGAAACAAATTCCTGAACTGGGACATTACACAAATGTGCAATTTCACGAACAACCGCTGCAGTAAGACTATTTGTAGCATAACGTTGTGAAACATTGTATTTTAATACAACACCACTATGATATTGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGCACTGCATGAGCTTGATCAGCTGATACAAGAGAAGATTTAGCTAATGATT]

[+] EMBL CD141626             [ATCTACAGTAGGTACACCTAATTGCGATGATAATAATGGTCCTATTGTAGAACCACAATGTATATCTTGTCTTGAAACAAATTCCTGAACTGGGACATTACACAAATGTGCAATTTCACGAACAACCGCTGCAGTAAGACTATTTGTAGCATAACGTTGTGAAACATTGTATTTTAATACAACACCACTATGATATTGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGCACTGCATGAGCTTGATCAGCTGATACAAGAGAAGATTTAGCTAATGATT]




>consensus_1528#0
ATCTACAGTAGGTACACCTAATTGCGATGATAATAATGGTCCTATTGTAGAACCACAATG
TATATCTTGTCTTGAAACAAATTCCTGAACTGGGACATTACACAAATGTGCAATTTCACG
AACAACCGCTGCAGTAAGACTATTTGTAGCATAACGTTGTGAAACATTGTATTTTAATAC
AACACCACTATGATATTGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATG
CACTGCATGAGCTTGATCAGCTGATACAAGAGAAGATTTAGCTAATGATT

consensusID : consensus_1528#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [CCTCTCCCAGAGAAGTCTACTCACTGCCTTCTCGTGGCACTAATGTTGTTTACGAAATTGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGAACTGCATGAGCTTGATCAGCCGATACAAGAAAAGATTTAGCTAATGATTTTTCAAAATGTAAATCTAAATTACATTTTGTACATTGTGATGTATTTGTATTGTTACATGGCGTAAGTGTTTCAGATAAATTGCACATTTCAAATGCTTTATTGAGTCGACGAATAACAGACAAAGTAT]

[+] EMBL CD061204             [CCTCTCCCAGAGAAGTCTACTCACTGCCTTCTCGTGGCACTAATGTTGTTTACGAAATTGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGAACTGCATGAGCTTGATCAGCCGATACAAGAAAAGATTTAGCTAATGATTTTTCAAAATGTAAATCTAAATTACATTTTGTACATTGTGATGTATTTGTATTGTTACATGGCGTAAGTGTTTCAGATAAATTGCACATTTCAAATGCTTTATTGAGTCGACGAATAACAGACAAAGTAT]




>consensus_1528#1
CCTCTCCCAGAGAAGTCTACTCACTGCCTTCTCGTGGCACTAATGTTGTTTACGAAATTG
AGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGAACTGCATGAGCTTGATC
AGCCGATACAAGAAAAGATTTAGCTAATGATTTTTCAAAATGTAAATCTAAATTACATTT
TGTACATTGTGATGTATTTGTATTGTTACATGGCGTAAGTGTTTCAGATAAATTGCACAT
TTCAAATGCTTTATTGAGTCGACGAATAACAGACAAAGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1528#0      ATCTACAGTAGGTACACCTAATTGCGATGATAATAATGGTCCTATTGTAGAACCACAATG 60
consensus_1528#1      -CCTCTCCCAGAGAAGTCTACTCACTGCCTTC-TCGTGGCACTAATGTTGTTTACGAAAT 58
                        **     **  *   *** *  *     *  *  ***  *** *** *      **  

consensus_1528#0      TATATCTTGTCTTGAAACAAATTCCTGAACTGGGACATTACACAAATGTGCAATTTCACG 120
consensus_1528#1      TGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGAAC-TGCATGAGCTTG 117
                      *     ** *  * * *   **  *         *   *  *  **  ****    *  *

consensus_1528#0      AACAACCGCTGCAGTAAGACTATTTGTAGCATAACGTTGTGAAACATTGTATTTTAATAC 180
consensus_1528#1      ATCAGCCGATACAAGAAAAG-ATTTAGCTAATGATTTTTCAAAATGTAAATCTAAATTAC 176
                      * ** *** * **  ** *  ****     ** *  **   ***  *     *  * ***

consensus_1528#0      AACACCACTATGATATTGAGGTT-TATGATAACATTCATGTCGTTCACCCCATGATGGAT 239
consensus_1528#1      ATTTTGTACATTGTGATGTATTTGTATTGTTACATGGCGTAAGTGTTTCAGATAAATTGC 236
                      *        **  *  **   ** ***  * ****       **    *  ** *     

consensus_1528#0      GCACTGCATGAGCTTGATCAGCTGATACAAGAGAAGATTTAGCTAATGATT 290
consensus_1528#1      ACATTTCAAATGCTTTATTGAGTCGACGAATAACAGACAAAGTAT------ 281
                       ** * **   **** **    *     ** *  ***   **