These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [ATCTACAGTAGGTACACCTAATTGCGATGATAATAATGGTCCTATTGTAGAACCACAATGTATATCTTGTCTTGAAACAAATTCCTGAACTGGGACATTACACAAATGTGCAATTTCACGAACAACCGCTGCAGTAAGACTATTTGTAGCATAACGTTGTGAAACATTGTATTTTAATACAACACCACTATGATATTGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGCACTGCATGAGCTTGATCAGCTGATACAAGAGAAGATTTAGCTAATGATT] [+] EMBL CD141626 [ATCTACAGTAGGTACACCTAATTGCGATGATAATAATGGTCCTATTGTAGAACCACAATGTATATCTTGTCTTGAAACAAATTCCTGAACTGGGACATTACACAAATGTGCAATTTCACGAACAACCGCTGCAGTAAGACTATTTGTAGCATAACGTTGTGAAACATTGTATTTTAATACAACACCACTATGATATTGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGCACTGCATGAGCTTGATCAGCTGATACAAGAGAAGATTTAGCTAATGATT] consensusID : consensus_1528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [CCTCTCCCAGAGAAGTCTACTCACTGCCTTCTCGTGGCACTAATGTTGTTTACGAAATTGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGAACTGCATGAGCTTGATCAGCCGATACAAGAAAAGATTTAGCTAATGATTTTTCAAAATGTAAATCTAAATTACATTTTGTACATTGTGATGTATTTGTATTGTTACATGGCGTAAGTGTTTCAGATAAATTGCACATTTCAAATGCTTTATTGAGTCGACGAATAACAGACAAAGTAT] [+] EMBL CD061204 [CCTCTCCCAGAGAAGTCTACTCACTGCCTTCTCGTGGCACTAATGTTGTTTACGAAATTGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGAACTGCATGAGCTTGATCAGCCGATACAAGAAAAGATTTAGCTAATGATTTTTCAAAATGTAAATCTAAATTACATTTTGTACATTGTGATGTATTTGTATTGTTACATGGCGTAAGTGTTTCAGATAAATTGCACATTTCAAATGCTTTATTGAGTCGACGAATAACAGACAAAGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1528#0 ATCTACAGTAGGTACACCTAATTGCGATGATAATAATGGTCCTATTGTAGAACCACAATG 60 consensus_1528#1 -CCTCTCCCAGAGAAGTCTACTCACTGCCTTC-TCGTGGCACTAATGTTGTTTACGAAAT 58 ** ** * *** * * * * *** *** *** * ** consensus_1528#0 TATATCTTGTCTTGAAACAAATTCCTGAACTGGGACATTACACAAATGTGCAATTTCACG 120 consensus_1528#1 TGAGGTTTATGATAACATTCATGTCGTTCACCCCATGATGGATGAAC-TGCATGAGCTTG 117 * ** * * * * ** * * * * ** **** * * consensus_1528#0 AACAACCGCTGCAGTAAGACTATTTGTAGCATAACGTTGTGAAACATTGTATTTTAATAC 180 consensus_1528#1 ATCAGCCGATACAAGAAAAG-ATTTAGCTAATGATTTTTCAAAATGTAAATCTAAATTAC 176 * ** *** * ** ** * **** ** * ** *** * * * *** consensus_1528#0 AACACCACTATGATATTGAGGTT-TATGATAACATTCATGTCGTTCACCCCATGATGGAT 239 consensus_1528#1 ATTTTGTACATTGTGATGTATTTGTATTGTTACATGGCGTAAGTGTTTCAGATAAATTGC 236 * ** * ** ** *** * **** ** * ** * consensus_1528#0 GCACTGCATGAGCTTGATCAGCTGATACAAGAGAAGATTTAGCTAATGATT 290 consensus_1528#1 ACATTTCAAATGCTTTATTGAGTCGACGAATAACAGACAAAGTAT------ 281 ** * ** **** ** * ** * *** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||