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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1531 cluster # 1531       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1531#0 length = 610 sequences # 1  
consensus_1531#1 length = 276 sequences # 1  

consensusID : consensus_1531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence
                              [ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTTATACGTTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGACCGGGTATGTAATCAACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATACAAGACTGAAGTGCTTATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGTGTAAATAAACACACAAAAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTAAAAGTTTTAGCGAAGCAAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTTAGTAGTAATTCATTAAATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTTATGGGTACGAAAATACATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAACTTCGAAAACAATTAAAGATCATTTGAGAATAGCTATTATATATAATATATATATATATATATNATAAGTGGTGTATGAAAAGTTT]

[+] EMBL CD077332             [ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTTATACGTTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGACCGGGTATGTAATCAACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATACAAGACTGAAGTGCTTATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGTGTAAATAAACACACAAAAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTAAAAGTTTTAGCGAAGCAAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTTAGTAGTAATTCATTAAATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTTATGGGTACGAAAATACATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAACTTCGAAAACAATTAAAGATCATTTGAGAATAGCTATTATATATAATATATATATATATATATNATAAGTGGTGTATGAAAAGTTT]


>consensus_1531#0 ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTTATACGTTGAGCTTTACAA AAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGACCGGGTATGTAATCA ACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAACCACGGTTTTCACAGCA AATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATACAAGACTGAAGTGCT TATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGTGTAAATAAACACACAA AAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTAAAAGTTTTAGCGAAGC AAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTTAGTAGTAATTCATTAA ATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTTATGGGTACGAAAATAC ATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAACTTCGAAAACAATTAA AGATCATTTGAGAATAGCTATTATATATAATATATATATATATATATNATAAGTGGTGTA TGAAAAGTTT



consensusID : consensus_1531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence
                              [ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATACATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACACCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATTCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC]

[+] EMBL AI976363             [ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATACATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACACCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATTCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC]


>consensus_1531#1 ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATA CATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACA CCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAAC CACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAAT TCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1531#0      ---ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTT------------ATA 45
consensus_1531#1      ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATA 60
                            **  * ** **** * *  *  **    *    ** ***            ***

consensus_1531#0      CGTTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGA 105
consensus_1531#1      CATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACA 120
                      * ******************************************** *********** *

consensus_1531#0      CCGGGTATGTAATCA-ACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAAC 164
consensus_1531#1      CCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAAC 180
                      ****** ******** ************************ *******************

consensus_1531#0      CACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAAT 224
consensus_1531#1      CACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAAT 240
                      ************************************************************

consensus_1531#0      ACAAGACTGAAGTGCTTATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGT 284
consensus_1531#1      TCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC------------------------ 276
                       ****************** ****************                        

consensus_1531#0      GTAAATAAACACACAAAAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTA 344
consensus_1531#1      ------------------------------------------------------------
                                                                                  

consensus_1531#0      AAAGTTTTAGCGAAGCAAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTT 404
consensus_1531#1      ------------------------------------------------------------
                                                                                  

consensus_1531#0      AGTAGTAATTCATTAAATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTT 464
consensus_1531#1      ------------------------------------------------------------
                                                                                  

consensus_1531#0      ATGGGTACGAAAATACATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAA 524
consensus_1531#1      ------------------------------------------------------------
                                                                                  

consensus_1531#0      CTTCGAAAACAATTAAAGATCATTTGAGAATAGCTATTATATATAATATATATATATATA 584
consensus_1531#1      ------------------------------------------------------------
                                                                                  

consensus_1531#0      TATNATAAGTGGTGTATGAAAAGTTT 610
consensus_1531#1      --------------------------
                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)