These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTTATACGTTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGACCGGGTATGTAATCAACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATACAAGACTGAAGTGCTTATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGTGTAAATAAACACACAAAAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTAAAAGTTTTAGCGAAGCAAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTTAGTAGTAATTCATTAAATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTTATGGGTACGAAAATACATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAACTTCGAAAACAATTAAAGATCATTTGAGAATAGCTATTATATATAATATATATATATATATATNATAAGTGGTGTATGAAAAGTTT] [+] EMBL CD077332 [ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTTATACGTTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGACCGGGTATGTAATCAACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATACAAGACTGAAGTGCTTATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGTGTAAATAAACACACAAAAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTAAAAGTTTTAGCGAAGCAAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTTAGTAGTAATTCATTAAATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTTATGGGTACGAAAATACATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAACTTCGAAAACAATTAAAGATCATTTGAGAATAGCTATTATATATAATATATATATATATATATNATAAGTGGTGTATGAAAAGTTT] consensusID : consensus_1531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATACATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACACCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATTCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC] [+] EMBL AI976363 [ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATACATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACACCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATTCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1531#0 ---ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTT------------ATA 45 consensus_1531#1 ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATA 60 ** * ** **** * * * ** * ** *** *** consensus_1531#0 CGTTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGA 105 consensus_1531#1 CATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACA 120 * ******************************************** *********** * consensus_1531#0 CCGGGTATGTAATCA-ACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAAC 164 consensus_1531#1 CCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAAC 180 ****** ******** ************************ ******************* consensus_1531#0 CACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAAT 224 consensus_1531#1 CACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAAT 240 ************************************************************ consensus_1531#0 ACAAGACTGAAGTGCTTATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGT 284 consensus_1531#1 TCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC------------------------ 276 ****************** **************** consensus_1531#0 GTAAATAAACACACAAAAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTA 344 consensus_1531#1 ------------------------------------------------------------ consensus_1531#0 AAAGTTTTAGCGAAGCAAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTT 404 consensus_1531#1 ------------------------------------------------------------ consensus_1531#0 AGTAGTAATTCATTAAATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTT 464 consensus_1531#1 ------------------------------------------------------------ consensus_1531#0 ATGGGTACGAAAATACATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAA 524 consensus_1531#1 ------------------------------------------------------------ consensus_1531#0 CTTCGAAAACAATTAAAGATCATTTGAGAATAGCTATTATATATAATATATATATATATA 584 consensus_1531#1 ------------------------------------------------------------ consensus_1531#0 TATNATAAGTGGTGTATGAAAAGTTT 610 consensus_1531#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||