These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCATTTAATCCATCAAATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAACAACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTAATTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGCACGTAAAATTAAAGCATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAAAGCTCCTCTTGATATAGTC] [+] EMBL CD191662 [GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCATTTAATCCATCAAATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAACAACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTAATTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGCACGTAAAATTAAAGCATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAAAGCTCCTCTTGATATAGTC] consensusID : consensus_1534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [ATTCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGACAGCTTCTCTTGATATAGTCGACATGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTTCTGTATATGTTCATTAACTATCAAATATACTTGCCTTTTGTAAATAAAAAAAATACTTGTGCCATACATTGAATGCTAACAAAGAGAT] [+] EMBL AI014206 [ATTCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGACAGCTTCTCTTGATATAGTCGACATGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTTCTGTATATGTTCATTAACTATCAAATATACTTGCCTTTTGTAAATAAAAAAAATACTTGTGCCATACATTGAATGCTAACAAAGAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1534#0 GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCAT 60 consensus_1534#1 ----------------------------------------------------------AT 2 ** consensus_1534#0 TTAATCCATCAA-ATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAA 119 consensus_1534#1 TCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTAAA 62 * * *** ** **** ** * ** * ** *** ** * * **** consensus_1534#0 CAACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTA 179 consensus_1534#1 CAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGAAA 122 *** * * * * * ***** ** * ** * * * * * * consensus_1534#0 ATTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGC-ACGTAAAATTAA 238 consensus_1534#1 TCCTATAAGGGAGAGATCAAGGAA--AATTGATTGACAGCTTCTCTTGATATAGTCGACA 180 * **** * * **** * **** * * ** * * ** * consensus_1534#0 AGCATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAA 298 consensus_1534#1 TGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTT 240 ** ***** *** * * *** * * * * * * consensus_1534#0 AAATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACT 358 consensus_1534#1 CTGTATATGTTCATTAACTATCAAAT---ATACTTGCCTTTTGTAAATAAAAAAAATACT 297 ** * * ** * ** *** *** * * * * ** * ** **** consensus_1534#0 TGCCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAA 418 consensus_1534#1 TGT--GCCATACATTG-------AATGCTAACAAAGAGAT-------------------- 328 ** * *** *** *** *** * **** consensus_1534#0 AGCTCCTCTTGATATAGTC 437 consensus_1534#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||