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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1534 cluster # 1534       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1534#0 length = 437 sequences # 1  
consensus_1534#1 length = 328 sequences # 1  

consensusID : consensus_1534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence
                              [GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCATTTAATCCATCAAATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAACAACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTAATTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGCACGTAAAATTAAAGCATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAAAGCTCCTCTTGATATAGTC]

[+] EMBL CD191662             [GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCATTTAATCCATCAAATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAACAACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTAATTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGCACGTAAAATTAAAGCATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAAAGCTCCTCTTGATATAGTC]


>consensus_1534#0 GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCAT TTAATCCATCAAATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAAC AACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTAA TTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGCACGTAAAATTAAAG CATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAAAA ATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTG CCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAAAG CTCCTCTTGATATAGTC



consensusID : consensus_1534#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [ATTCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGACAGCTTCTCTTGATATAGTCGACATGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTTCTGTATATGTTCATTAACTATCAAATATACTTGCCTTTTGTAAATAAAAAAAATACTTGTGCCATACATTGAATGCTAACAAAGAGAT]

[+] EMBL AI014206             [ATTCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGACAGCTTCTCTTGATATAGTCGACATGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTTCTGTATATGTTCATTAACTATCAAATATACTTGCCTTTTGTAAATAAAAAAAATACTTGTGCCATACATTGAATGCTAACAAAGAGAT]


>consensus_1534#1 ATTCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTA AACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGA AATCCTATAAGGGAGAGATCAAGGAAAATTGATTGACAGCTTCTCTTGATATAGTCGACA TGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTT CTGTATATGTTCATTAACTATCAAATATACTTGCCTTTTGTAAATAAAAAAAATACTTGT GCCATACATTGAATGCTAACAAAGAGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1534#0      GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCAT 60
consensus_1534#1      ----------------------------------------------------------AT 2
                                                                                **

consensus_1534#0      TTAATCCATCAA-ATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAA 119
consensus_1534#1      TCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTAAA 62
                      *     *  *** ** **** ** *   **   *   **  ***   **  * *  ****

consensus_1534#0      CAACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTA 179
consensus_1534#1      CAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGAAA 122
                      ***  * *     *  *      * *****  ** *   **  * * *     *  *  *

consensus_1534#0      ATTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGC-ACGTAAAATTAA 238
consensus_1534#1      TCCTATAAGGGAGAGATCAAGGAA--AATTGATTGACAGCTTCTCTTGATATAGTCGACA 180
                          * ****   * *  **** *   **** *  * **   *     *  **      *

consensus_1534#0      AGCATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAA 298
consensus_1534#1      TGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTT 240
                       **   ***** ***   *  *   ***     *   * *    *   *     *     

consensus_1534#0      AAATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACT 358
consensus_1534#1      CTGTATATGTTCATTAACTATCAAAT---ATACTTGCCTTTTGTAAATAAAAAAAATACT 297
                         **     * * ** * ** ***    *** * *  *     * **  *  ** ****

consensus_1534#0      TGCCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAA 418
consensus_1534#1      TGT--GCCATACATTG-------AATGCTAACAAAGAGAT-------------------- 328
                      **    * *** ***        *** ***  *  ****                     

consensus_1534#0      AGCTCCTCTTGATATAGTC 437
consensus_1534#1      -------------------
                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)