cluster # 1546

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Schistosoma mansoni
cluster # 1546 cluster # 1546 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1546#0 length = 635 sequences # 1

consensus_1546#1 length = 437 sequences # 1

consensusID : consensus_1546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CGCAAATATCAAAGTTAATCAACTATTTATTTGCTGATATTAGTCTGTTTTAATTCTGAACTAAATAAATCACTTTTTTCAAAAGAAAAAAGCAAACATTAATGATGGCCAATGTATCATTAAGACTTTACATTGAAACTGACGATACTGACTATCCAGGATTGAAGAGATTAAAATTACAAGGAAAAGATTTAGAAAATGTACCAGCTGAATTATTCATGTTAAGAGAATTACAAGTATTAGATATGAGTCCAGAAAGACAACCATCATTAACATATAAATTGTTAGAACTTCCCTCAGATATTGGTTATTTAATTAATCTTAGAATATTAATATTGGATACAAATGAACTGCATAGTCTACCATCTGAAATTGGTTCATTGACACAATTAGAAAAATTATCTGCATCAAATAATCAATTGAAAAGTTTACCAACATCAATAGAGAGATTAAAGCAAATGAAAAGTCTACATTTAGCAAATAATTTATTTGCTGAGTTTCCTAAACCAATATTGAAATTAACAAAGTTGGAGTTCTTAGATTTAAGCAGTAATCATTTGGAAATGTTACCATCATCTATAACTGATTTAATCAATTTAGAAAGTTTATTATTATTCGACAATCGTTTGATCAGT]

[+] EMBL CD079289             [CGCAAATATCAAAGTTAATCAACTATTTATTTGCTGATATTAGTCTGTTTTAATTCTGAACTAAATAAATCACTTTTTTCAAAAGAAAAAAGCAAACATTAATGATGGCCAATGTATCATTAAGACTTTACATTGAAACTGACGATACTGACTATCCAGGATTGAAGAGATTAAAATTACAAGGAAAAGATTTAGAAAATGTACCAGCTGAATTATTCATGTTAAGAGAATTACAAGTATTAGATATGAGTCCAGAAAGACAACCATCATTAACATATAAATTGTTAGAACTTCCCTCAGATATTGGTTATTTAATTAATCTTAGAATATTAATATTGGATACAAATGAACTGCATAGTCTACCATCTGAAATTGGTTCATTGACACAATTAGAAAAATTATCTGCATCAAATAATCAATTGAAAAGTTTACCAACATCAATAGAGAGATTAAAGCAAATGAAAAGTCTACATTTAGCAAATAATTTATTTGCTGAGTTTCCTAAACCAATATTGAAATTAACAAAGTTGGAGTTCTTAGATTTAAGCAGTAATCATTTGGAAATGTTACCATCATCTATAACTGATTTAATCAATTTAGAAAGTTTATTATTATTCGACAATCGTTTGATCAGT]




>consensus_1546#0
CGCAAATATCAAAGTTAATCAACTATTTATTTGCTGATATTAGTCTGTTTTAATTCTGAA
CTAAATAAATCACTTTTTTCAAAAGAAAAAAGCAAACATTAATGATGGCCAATGTATCAT
TAAGACTTTACATTGAAACTGACGATACTGACTATCCAGGATTGAAGAGATTAAAATTAC
AAGGAAAAGATTTAGAAAATGTACCAGCTGAATTATTCATGTTAAGAGAATTACAAGTAT
TAGATATGAGTCCAGAAAGACAACCATCATTAACATATAAATTGTTAGAACTTCCCTCAG
ATATTGGTTATTTAATTAATCTTAGAATATTAATATTGGATACAAATGAACTGCATAGTC
TACCATCTGAAATTGGTTCATTGACACAATTAGAAAAATTATCTGCATCAAATAATCAAT
TGAAAAGTTTACCAACATCAATAGAGAGATTAAAGCAAATGAAAAGTCTACATTTAGCAA
ATAATTTATTTGCTGAGTTTCCTAAACCAATATTGAAATTAACAAAGTTGGAGTTCTTAG
ATTTAAGCAGTAATCATTTGGAAATGTTACCATCATCTATAACTGATTTAATCAATTTAG
AAAGTTTATTATTATTCGACAATCGTTTGATCAGT

consensusID : consensus_1546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [GTATTACGATATGAGTCCAGAAAGACAACCATCATTAACATATAACATTGTTAGAACTTCCCTCAGATATTGAATATATGTGGTCAGATTGGTAGAAACGTACTACGCCAATATGCAACTAAGTCGCAATAATGGTCGATCTCTTTCCAGTCATACTGAATAACATTAAATATTCTCCATCTATATAGTTCTACTAACTTTAGTATTATTAGTCTTTAATCTAATTTAAGAGTATGTACTAGCCTTATTTAGTATACCTTGAATATTTTGTTAAACTCTAGACAGTTGTTACGTAATATAACCTCTTTTTTGAATTCTCTATATTTTTGTCTTATTTCATGTAGTCTTGAGATGTTTCTCTGTTTGTTTGTCATGTGGCTTACATATGAACAGTTTTCCTGTCAGCTTTGAATTTGGTCTGCAACTTGATGGTGTCT]

[+] EMBL CD077402             [GTATTACGATATGAGTCCAGAAAGACAACCATCATTAACATATAACATTGTTAGAACTTCCCTCAGATATTGAATATATGTGGTCAGATTGGTAGAAACGTACTACGCCAATATGCAACTAAGTCGCAATAATGGTCGATCTCTTTCCAGTCATACTGAATAACATTAAATATTCTCCATCTATATAGTTCTACTAACTTTAGTATTATTAGTCTTTAATCTAATTTAAGAGTATGTACTAGCCTTATTTAGTATACCTTGAATATTTTGTTAAACTCTAGACAGTTGTTACGTAATATAACCTCTTTTTTGAATTCTCTATATTTTTGTCTTATTTCATGTAGTCTTGAGATGTTTCTCTGTTTGTTTGTCATGTGGCTTACATATGAACAGTTTTCCTGTCAGCTTTGAATTTGGTCTGCAACTTGATGGTGTCT]




>consensus_1546#1
GTATTACGATATGAGTCCAGAAAGACAACCATCATTAACATATAACATTGTTAGAACTTC
CCTCAGATATTGAATATATGTGGTCAGATTGGTAGAAACGTACTACGCCAATATGCAACT
AAGTCGCAATAATGGTCGATCTCTTTCCAGTCATACTGAATAACATTAAATATTCTCCAT
CTATATAGTTCTACTAACTTTAGTATTATTAGTCTTTAATCTAATTTAAGAGTATGTACT
AGCCTTATTTAGTATACCTTGAATATTTTGTTAAACTCTAGACAGTTGTTACGTAATATA
ACCTCTTTTTTGAATTCTCTATATTTTTGTCTTATTTCATGTAGTCTTGAGATGTTTCTC
TGTTTGTTTGTCATGTGGCTTACATATGAACAGTTTTCCTGTCAGCTTTGAATTTGGTCT
GCAACTTGATGGTGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1546#0      CGCAAATATCAAAGTTAATCAACTATTTATTTGCTGATATTAGTCTGTTTTAATTCTGAA 60
consensus_1546#1      ------------------------------------------------------------
                                                                                  

consensus_1546#0      CTAAATAAATCACTTTTTTCAAAAGAAAAAAGCAAACATTAATGATGGCCAATGTATCAT 120
consensus_1546#1      ------------------------------------------------------------
                                                                                  

consensus_1546#0      TAAGACTTTACATTGAAACTGACGATACTGACTATCCAGGATTGAAGAGATTAAAATTAC 180
consensus_1546#1      ------------------------------------------------------------
                                                                                  

consensus_1546#0      AAGGAAAAGATTTAGAAAATGTACCAGCTGAATTATTCATGTTAAGAGAATTACAAGTAT 240
consensus_1546#1      --------------------------------------------------------GTAT 4
                                                                              ****

consensus_1546#0      TA-GATATGAGTCCAGAAAGACAACCATCATTAACATATAA-ATTGTTAGAACTTCCCTC 298
consensus_1546#1      TACGATATGAGTCCAGAAAGACAACCATCATTAACATATAACATTGTTAGAACTTCCCTC 64
                      ** ************************************** ******************

consensus_1546#0      AGATATTGGTTATTTA-------ATTAATCTTAGAATATTAATATTGGATACAAATGAAC 351
consensus_1546#1      AGATATTGAATATATGTGGTCAGATTGGTAGAAACGTACTACGCCAATATGCAACTAAGT 124
                      ********  *** *        ***  *   *   ** **       ** *** * *  

consensus_1546#0      TGCA-TAGTCTACCATCTGAAATTGGTT-CATTGACACAATTAGAAAAATTATCTGCATC 409
consensus_1546#1      CGCAATAATGGTCGATCTCTTTCCAGTCATACTGA-ATAACATTAAATATTCTCCATCTA 183
                       *** ** *   * ****       **   * *** * **    *** *** **    * 

consensus_1546#0      AAATAATCAATTGAAAAGTTTACCAACA-TCAATAGAGAGATTAAAGCAAATGAAAAGTC 468
consensus_1546#1      TATAGTTCTACTAACTTTAGTATTATTAGTCTTTAATCTAATTTAAGAGTATGTACTAGC 243
                       *    ** * * *      **  *  * **  **     *** ***   *** *    *

consensus_1546#0      TACATTTAGCAAA---TAATTTATTTGCTGAGTTTCCTAAACCAATATTGAAAT-TAACA 524
consensus_1546#1      CTTATTTAGTATACCTTGAATATTTTGTTAAACTCTAGACAGTTGTTACGTAATATAACC 303
                         ****** * *   * * *  **** * *  *    * *    *   * *** **** 

consensus_1546#0      AAGTT---GGAGTTCTTAGATTTAAGCAGTAATC------ATTTGGAAATGTTACCATCA 575
consensus_1546#1      TCTTTTTTGAATTCTCTATATTTTTGTCTTATTTCATGTAGTCTTGAGATGTT-TCTCTG 362
                         **   * * *   ** ****  *   ** *        * * ** *****  *    

consensus_1546#0      TCTATAACTGATTTAATCAATTTAGAAAGTTTATTATTATTCGACAATCGTTTGATCAGT 635
consensus_1546#1      TTTGTTTGTCATGTGGCTTACATATGAACAGTTTTCCTGTCAGCTTTGAATTTGGTCTGC 422
                      * * *   * ** *     *  **  **   * **  * *  *       **** ** * 

consensus_1546#0      ---------------
consensus_1546#1      AACTTGATGGTGTCT 437