cluster # 1570

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Schistosoma mansoni
cluster # 1570 cluster # 1570 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1570#0 length = 601 sequences # 1

consensus_1570#1 length = 200 sequences # 1

consensusID : consensus_1570#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [CAGAAGAAGACGAATAGACAGTAATAATAATAATAATCATAACAATAATAAGATTTTGTTCCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCATAATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTATAATCACTTACTTATTTACTTAAGCCTGTTACCCCTCATGGAGGAGCATAGGCCACTGTATAATCATTAGTTTTCCCTTATAACATTTTGACTTGTTTATATTTCACTCATTTTTAATTATCAACAAACAGGAGCTTTCTTTTTTATGACCAAGCTTTTATTCATCTTTTCTTTTCCCTGCTGAATTATTATATTCTGTCTTGAATCATACCATGATTATTTTCATATTCATTACATGTACACTTTGTAATTCCATGTGTTATGATTACTATTATTGATTTATTCACTATGCACTATCAGTTCACTCATTGTATTTTCAGTTTATATTTTTTTTATCCGTTCATTGTCTAATGTTTAACACTCTACTCATGTTTGTTAATTTCCTCTTTCTTCCTATCTCATATTGTTTTGTTTTTTTTTA]

[+] EMBL CD201406             [CAGAAGAAGACGAATAGACAGTAATAATAATAATAATCATAACAATAATAAGATTTTGTTCCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCATAATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTATAATCACTTACTTATTTACTTAAGCCTGTTACCCCTCATGGAGGAGCATAGGCCACTGTATAATCATTAGTTTTCCCTTATAACATTTTGACTTGTTTATATTTCACTCATTTTTAATTATCAACAAACAGGAGCTTTCTTTTTTATGACCAAGCTTTTATTCATCTTTTCTTTTCCCTGCTGAATTATTATATTCTGTCTTGAATCATACCATGATTATTTTCATATTCATTACATGTACACTTTGTAATTCCATGTGTTATGATTACTATTATTGATTTATTCACTATGCACTATCAGTTCACTCATTGTATTTTCAGTTTATATTTTTTTTATCCGTTCATTGTCTAATGTTTAACACTCTACTCATGTTTGTTAATTTCCTCTTTCTTCCTATCTCATATTGTTTTGTTTTTTTTTA]




>consensus_1570#0
CAGAAGAAGACGAATAGACAGTAATAATAATAATAATCATAACAATAATAAGATTTTGTT
CCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCAT
AATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTA
TAATCACTTACTTATTTACTTAAGCCTGTTACCCCTCATGGAGGAGCATAGGCCACTGTA
TAATCATTAGTTTTCCCTTATAACATTTTGACTTGTTTATATTTCACTCATTTTTAATTA
TCAACAAACAGGAGCTTTCTTTTTTATGACCAAGCTTTTATTCATCTTTTCTTTTCCCTG
CTGAATTATTATATTCTGTCTTGAATCATACCATGATTATTTTCATATTCATTACATGTA
CACTTTGTAATTCCATGTGTTATGATTACTATTATTGATTTATTCACTATGCACTATCAG
TTCACTCATTGTATTTTCAGTTTATATTTTTTTTATCCGTTCATTGTCTAATGTTTAACA
CTCTACTCATGTTTGTTAATTTCCTCTTTCTTCCTATCTCATATTGTTTTGTTTTTTTTT
A

consensusID : consensus_1570#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence

                              [TAATAATAATAATCATAACAATAATAAGATTTTGTTCCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCATAATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTATAATCACTTACTTATTTACTTTAGCTAACATTTTCATATATATA]

[-] EMBL CD061337             [TAATAATAATAATCATAACAATAATAAGATTTTGTTCCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCATAATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTATAATCACTTACTTATTTACTTTAGCTAACATTTTCATATATATA]




>consensus_1570#1
TAATAATAATAATCATAACAATAATAAGATTTTGTTCCTTTCAAATTTTTGTAATAAATA
GATTTCCCCCGGTTATGGTTTGAGAACTATTTCCATAATTTTTATATGGTAAATTTTCTT
CTTTTCTCATTGATAACCAATTGTATTGATCATGTATAATCACTTACTTATTTACTTTAG
CTAACATTTTCATATATATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1570#0      CAGAAGAAGACGAATAGACAGTAATAATAATAATAATCATAACAATAATAAGATTTTGTT 60
consensus_1570#1      ------------------------TAATAATAATAATCATAACAATAATAAGATTTTGTT 36
                                              ************************************

consensus_1570#0      CCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCAT 120
consensus_1570#1      CCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCAT 96
                      ************************************************************

consensus_1570#0      AATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTA 180
consensus_1570#1      AATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTA 156
                      ************************************************************

consensus_1570#0      TAATCACTTACTTATTTACTTAAGCCTGTTACCCCTCATGGAGGAGCATAGGCCACTGTA 240
consensus_1570#1      TAATCACTTACTTATTTACTTTAGCTAACATTTTCATATATATA---------------- 200
                      ********************* ***         *  **  *                  

consensus_1570#0      TAATCATTAGTTTTCCCTTATAACATTTTGACTTGTTTATATTTCACTCATTTTTAATTA 300
consensus_1570#1      ------------------------------------------------------------
                                                                                  

consensus_1570#0      TCAACAAACAGGAGCTTTCTTTTTTATGACCAAGCTTTTATTCATCTTTTCTTTTCCCTG 360
consensus_1570#1      ------------------------------------------------------------
                                                                                  

consensus_1570#0      CTGAATTATTATATTCTGTCTTGAATCATACCATGATTATTTTCATATTCATTACATGTA 420
consensus_1570#1      ------------------------------------------------------------
                                                                                  

consensus_1570#0      CACTTTGTAATTCCATGTGTTATGATTACTATTATTGATTTATTCACTATGCACTATCAG 480
consensus_1570#1      ------------------------------------------------------------
                                                                                  

consensus_1570#0      TTCACTCATTGTATTTTCAGTTTATATTTTTTTTATCCGTTCATTGTCTAATGTTTAACA 540
consensus_1570#1      ------------------------------------------------------------
                                                                                  

consensus_1570#0      CTCTACTCATGTTTGTTAATTTCCTCTTTCTTCCTATCTCATATTGTTTTGTTTTTTTTT 600
consensus_1570#1      ------------------------------------------------------------
                                                                                  

consensus_1570#0      A 601
consensus_1570#1      -