These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [CAGAAGAAGACGAATAGACAGTAATAATAATAATAATCATAACAATAATAAGATTTTGTTCCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCATAATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTATAATCACTTACTTATTTACTTAAGCCTGTTACCCCTCATGGAGGAGCATAGGCCACTGTATAATCATTAGTTTTCCCTTATAACATTTTGACTTGTTTATATTTCACTCATTTTTAATTATCAACAAACAGGAGCTTTCTTTTTTATGACCAAGCTTTTATTCATCTTTTCTTTTCCCTGCTGAATTATTATATTCTGTCTTGAATCATACCATGATTATTTTCATATTCATTACATGTACACTTTGTAATTCCATGTGTTATGATTACTATTATTGATTTATTCACTATGCACTATCAGTTCACTCATTGTATTTTCAGTTTATATTTTTTTTATCCGTTCATTGTCTAATGTTTAACACTCTACTCATGTTTGTTAATTTCCTCTTTCTTCCTATCTCATATTGTTTTGTTTTTTTTTA] [+] EMBL CD201406 [CAGAAGAAGACGAATAGACAGTAATAATAATAATAATCATAACAATAATAAGATTTTGTTCCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCATAATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTATAATCACTTACTTATTTACTTAAGCCTGTTACCCCTCATGGAGGAGCATAGGCCACTGTATAATCATTAGTTTTCCCTTATAACATTTTGACTTGTTTATATTTCACTCATTTTTAATTATCAACAAACAGGAGCTTTCTTTTTTATGACCAAGCTTTTATTCATCTTTTCTTTTCCCTGCTGAATTATTATATTCTGTCTTGAATCATACCATGATTATTTTCATATTCATTACATGTACACTTTGTAATTCCATGTGTTATGATTACTATTATTGATTTATTCACTATGCACTATCAGTTCACTCATTGTATTTTCAGTTTATATTTTTTTTATCCGTTCATTGTCTAATGTTTAACACTCTACTCATGTTTGTTAATTTCCTCTTTCTTCCTATCTCATATTGTTTTGTTTTTTTTTA] consensusID : consensus_1570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence [TAATAATAATAATCATAACAATAATAAGATTTTGTTCCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCATAATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTATAATCACTTACTTATTTACTTTAGCTAACATTTTCATATATATA] [-] EMBL CD061337 [TAATAATAATAATCATAACAATAATAAGATTTTGTTCCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCATAATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTATAATCACTTACTTATTTACTTTAGCTAACATTTTCATATATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1570#0 CAGAAGAAGACGAATAGACAGTAATAATAATAATAATCATAACAATAATAAGATTTTGTT 60 consensus_1570#1 ------------------------TAATAATAATAATCATAACAATAATAAGATTTTGTT 36 ************************************ consensus_1570#0 CCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCAT 120 consensus_1570#1 CCTTTCAAATTTTTGTAATAAATAGATTTCCCCCGGTTATGGTTTGAGAACTATTTCCAT 96 ************************************************************ consensus_1570#0 AATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTA 180 consensus_1570#1 AATTTTTATATGGTAAATTTTCTTCTTTTCTCATTGATAACCAATTGTATTGATCATGTA 156 ************************************************************ consensus_1570#0 TAATCACTTACTTATTTACTTAAGCCTGTTACCCCTCATGGAGGAGCATAGGCCACTGTA 240 consensus_1570#1 TAATCACTTACTTATTTACTTTAGCTAACATTTTCATATATATA---------------- 200 ********************* *** * ** * consensus_1570#0 TAATCATTAGTTTTCCCTTATAACATTTTGACTTGTTTATATTTCACTCATTTTTAATTA 300 consensus_1570#1 ------------------------------------------------------------ consensus_1570#0 TCAACAAACAGGAGCTTTCTTTTTTATGACCAAGCTTTTATTCATCTTTTCTTTTCCCTG 360 consensus_1570#1 ------------------------------------------------------------ consensus_1570#0 CTGAATTATTATATTCTGTCTTGAATCATACCATGATTATTTTCATATTCATTACATGTA 420 consensus_1570#1 ------------------------------------------------------------ consensus_1570#0 CACTTTGTAATTCCATGTGTTATGATTACTATTATTGATTTATTCACTATGCACTATCAG 480 consensus_1570#1 ------------------------------------------------------------ consensus_1570#0 TTCACTCATTGTATTTTCAGTTTATATTTTTTTTATCCGTTCATTGTCTAATGTTTAACA 540 consensus_1570#1 ------------------------------------------------------------ consensus_1570#0 CTCTACTCATGTTTGTTAATTTCCTCTTTCTTCCTATCTCATATTGTTTTGTTTTTTTTT 600 consensus_1570#1 ------------------------------------------------------------ consensus_1570#0 A 601 consensus_1570#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||