These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_159#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [AAGAATATATATATATATATATAAAAGAAGCGGTAAAATATGCTCTTGATTTATTTTTATTTGATCACATGTATATCACCAATTTACAGTCATGAAAGATATTCATATGATGATCATGATGACTTTGAAGGTTCATTTTTCGACGATGATTATGGTTCACATGGTGGGTATCATTCAGGAAATTATGATAATCATCCTCAACATCCCCCAGCACATAATTCACCTGGAGAAGGTGAACCGTCACCTCCATATCCTGATGATGATCAAGAACCACCTCGAGCACCTCCTGAAAAACCTGAAGCACCACATGAGCCTGATGGCGACGAGAATTATGGTCGGCCACACTATAACCATAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACCTTCTAATTCAAACGAACAACCTAGTGGTTACGTTNGAGAAAACGTTAATAATGACGAAGGCGAATATAATAAACCCGATGA] [+] EMBL AI068226 [AAGAATATATATATATATATATAAAAGAAGCGGTAAAATATGCTCTTGATTTATTTTTATTTGATCACATGTATATCACCAATTTACAGTCATGAAAGATATTCATATGATGATCATGATGACTTTGAAGGTTCATTTTTCGACGATGATTATGGTTCACATGGTGGGTATCATTCAGGAAATTATGATAATCATCCTCAACATCCCCCAGCACATAATTCACCTGGAGAAGGTGAACCGTCACCTCCATATCCTGATGATGATCAAGAACCACCTCGAGCACCTCCTGAAAAACCTGAAGCACCACATGAGCCTGATGGCGACGAGAATTATGGTCGGCCACACTATAACCATAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACCTTCTAATTCAAACGAACAACCTAGTGGTTACGTTNGAGAAAACGTTAATAATGACGAAGGCGAATATAATAAACCCGATGA] consensusID : consensus_159#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCCTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTGTTTTGCTTGATACGCGTTTGTTTGACGGTTTGTATTTCTTATATTTAACATATCTAGTAGGCTTATATTCGTTCTCTTCTGTTTCATCGGGTTTATTATCTTCGCCTTCCTCATTATTAACGTTTTCTTCTACGTTACCACTAGGTTGTTCGTTTGAATTAGAAGGTATAGGANTAGG] [+] EMBL AI976525 [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCCTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTGTTTTGCTTGATACGCGTTTGTTTGACGGTTTGTATTTCTTATATTTAACATATCTAGTAGGCTTATATTCGTTCTCTTCTGTTTCATCGGGTTTATTATCTTCGCCTTCCTCATTATTAACGTTTTCTTCTACGTTACCACTAGGTTGTTCGTTTGAATTAGAAGGTATAGGANTAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_159#0 AAGAATATATATATATATATATAAAAGAAGCGGTAAAATATGCTCTTGATTTATTTTTAT 60 consensus_159#1 ------------------ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTT 42 * ** * *** * * *** * ** *** ***** * consensus_159#0 TTGATCACAT--GTATATCACCAATTTACAGTCATGAAAGATATTCATATGATGATCATG 118 consensus_159#1 TTTTTTTTTTTAATAAATAAATAATTTGTATTTATTAAATGTAAT-GTATAAATAGGGTT 101 ** * * ** ** * ***** * * ** *** ** * *** * * * consensus_159#0 ATGACTTTGAAGGTTCATTTTTCGACGATGATTATGGTTCACATGGTGGGTATCATTCAG 178 consensus_159#1 ATGTTATTA-----CCATTATT--ATTATTATTATTATTATAACAGTTCACTTGTATAAA 154 *** ** **** ** * ** ***** ** * ** * * * consensus_159#0 GAAATTATGATAATC-ATCCTCAACATCCCCCAGCACATAATTCACCTGGAGAAGGTGAA 237 consensus_159#1 CAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCAT-------TTGTA 207 * * ** ** * * * ** *** ** * ** * * ** * consensus_159#0 CCGTCACCTCCATATCCTGATGATGATCAAGAACCACCTCGAGCACCTCCTGAAAAACCT 297 consensus_159#1 TT-TTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTC-------- 258 * * * *** * * * **** * * ** ** ** consensus_159#0 GAAGCACCACATGAGCCTGATGGCGACGAGAATTATGGTCGGCCACACTATAACCATAGT 357 consensus_159#1 ----CGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGT 314 * * * *** * * * ** **** * * * * ** consensus_159#0 CGTTATC-ACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGT 416 consensus_159#1 TGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCCTCTTTCCTTTCGTT 374 ** * **** ** *** *** * * * * * consensus_159#0 TCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGG 476 consensus_159#1 CCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTG----GATGATTTTGTTTTGCTTGA 430 ** * * *** * ** * ** * ** ** ** * * consensus_159#0 TGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTA 536 consensus_159#1 T----ACGCGTTTGTTTGACGGTTTGTATTTCTTA-TATTTAACATATCTAGTAGGCTTA 485 * * *** **** * * ** ** ** ** ** ** *** consensus_159#0 TATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACC 596 consensus_159#1 TATTCGTTCTCTTCTGTTTCATCGGGTTTATTATCTTCGCCTTCCTCATTAT----TAAC 541 *** * * * ** * * * ** * ** ** * ** ** * * ** * consensus_159#0 TTCTAATTCAAACGAACAACCTAGTGGTTACGTTNGAGAAAACGTTAATAATGACGAAGG 656 consensus_159#1 GTTTTCTTCTACGTTACCACTAGGTTGTT-CGTTTGAATTAGAAGGTATAG-GANTAGG- 598 * * *** * ** ** ** *** **** ** * *** ** * * consensus_159#0 CGAATATAATAAACCCGATGA 677 consensus_159#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||