These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCAAATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTATGTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGATCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCTGTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATTGTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCCTTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACACTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTTTCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA] [+] EMBL BF936892 [ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCAAATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTATGTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGATCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCTGTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATTGTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCCTTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACACTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTTTCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA] consensusID : consensus_1607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [TCGACGGCCAGAATTCGGCACGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACAATAATTA] [+] EMBL CD077674 [TCGACGGCCAGAATTCGGCACGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACAATAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1607#0 ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCA 60 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 AATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTAT 120 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 GTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGA 180 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 TCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCT 240 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 GTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATT 300 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 GTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCC 360 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 TTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACA 420 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 CTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTT 480 consensus_1607#1 ------------------------------------------TCGACGGCCAGAA--TTC 16 * * ** ** ** consensus_1607#0 TCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTT 540 consensus_1607#1 GGCA----CGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTT 72 ** * *********************************************** consensus_1607#0 ATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGA 600 consensus_1607#1 ATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGA 132 ************************************************************ consensus_1607#0 AATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTAT 660 consensus_1607#1 AATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTAT 192 *********** ************************************************ consensus_1607#0 AATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA 711 consensus_1607#1 AATTACAATAATTA------------------------------------- 206 ****** **** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||