These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [AATTCTAGCGCTCAAAAACCATTGCAGCATGTCAGTTGTAGCGGTGCTTCTGTCGCAACTAGTCAAGATAGAACAACTCTAGCAACATGGGGTGGATCTTCACCTGTCCCTTCTTGTTCATCTGAAGCTTCTGAAGCAAGTGACGAAGGAGATGGAGTTAGTGTTTCTGACTCCTTACCTTTAAGTAAGTTTCTCTCTGTTAGGTCATGTTTATTAGCTATAACACACCTAGGCATATGATAGAGTAGTCAATTTTAGGTGTAAATAGTTGTTTGTCTTCCCCAGTCTTCATACTATTCTGCGTTACTACCGCACTGAGTGTAAGTTTACACGATCATGGGTGCCAGGTTGTTTTACAATGAGTATCCTGGATCATTTAGTCAAATTAGTAGGTCACTGCATCCCTTCCTGATCTGAATTGTTGAAAATCCTTCTTATTACGTGAAAGTACACTATTTACCAGTGATGTCGTTGGTTTGTTCAAATAACACTGGATTTACAATT] [+] EMBL CD061720 [AATTCTAGCGCTCAAAAACCATTGCAGCATGTCAGTTGTAGCGGTGCTTCTGTCGCAACTAGTCAAGATAGAACAACTCTAGCAACATGGGGTGGATCTTCACCTGTCCCTTCTTGTTCATCTGAAGCTTCTGAAGCAAGTGACGAAGGAGATGGAGTTAGTGTTTCTGACTCCTTACCTTTAAGTAAGTTTCTCTCTGTTAGGTCATGTTTATTAGCTATAACACACCTAGGCATATGATAGAGTAGTCAATTTTAGGTGTAAATAGTTGTTTGTCTTCCCCAGTCTTCATACTATTCTGCGTTACTACCGCACTGAGTGTAAGTTTACACGATCATGGGTGCCAGGTTGTTTTACAATGAGTATCCTGGATCATTTAGTCAAATTAGTAGGTCACTGCATCCCTTCCTGATCTGAATTGTTGAAAATCCTTCTTATTACGTGAAAGTACACTATTTACCAGTGATGTCGTTGGTTTGTTCAAATAACACTGGATTTACAATT] consensusID : consensus_1636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [ACGTCCAAGAGATATAAATAATTCAAACATTGCCACTCTACCACAAGAGACGTTAGACAATAAGCGAGTCACTTCTGTTTCGCAGTCCATTCTTCCAGAAGCCAGTTCACCTCGGACAAGATTTGAAATTTATAAAGATGACTCTGATGATCTAGTTAATACAAAACCTGCTGAAAATGTATCATTATCTTCGGATTTATCAACCAAAGCTGATTCTGTAACTTTTCAGCAACCAGAGGTGACCTGTATTGATAATACCGAACGTTTGTATGTTAACATGCGTGAGGCACGAATACAAATAGAAGAACAACGGAATCGATATGATCGGATCACTTCAACTGGAATCAATAATACCAATTCTAGCGCTCAAAAACCATTGCAGCATGTCA] [+] EMBL BG932325 [ACGTCCAAGAGATATAAATAATTCAAACATTGCCACTCTACCACAAGAGACGTTAGACAATAAGCGAGTCACTTCTGTTTCGCAGTCCATTCTTCCAGAAGCCAGTTCACCTCGGACAAGATTTGAAATTTATAAAGATGACTCTGATGATCTAGTTAATACAAAACCTGCTGAAAATGTATCATTATCTTCGGATTTATCAACCAAAGCTGATTCTGTAACTTTTCAGCAACCAGAGGTGACCTGTATTGATAATACCGAACGTTTGTATGTTAACATGCGTGAGGCACGAATACAAATAGAAGAACAACGGAATCGATATGATCGGATCACTTCAACTGGAATCAATAATACCAATTCTAGCGCTCAAAAACCATTGCAGCATGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1636#0 AATTCTAGCGCTCAAAAACCATTGCAGCATGTCAGTTGTAGCGGTGCTTCTGTCGCAACT 60 consensus_1636#1 -------ACGTCCAAGAGATATA--AATAATTCAAACATTGCCA---CTCTACCACAAG- 47 ** *** * ** * * *** * ** *** * *** consensus_1636#0 AGTCAAGATAGAACAACTCTAGCAACATGGGGTGGATCTTCACCTGTCCCTTCTTGTTCA 120 consensus_1636#1 AGACGTTAGACAATAAG-CGAGTCACTTC---TGTTTCGCAGTCCATTCTTCCAGA---A 100 ** * * * ** ** * ** ** * ** ** * * * * * * consensus_1636#0 TCTGAAGCTTCTGAAGCAAGTGACGAAGGAGATGGAGTTAGTGTTTCTGACTCCTTACCT 180 consensus_1636#1 GCCAGTTCACCTCGGACAAGATTTGAAATTTATAAAG---ATGACTCTGATGATCTAGTT 157 * * ** **** *** ** ** ** ***** ** * consensus_1636#0 TTAAGTAAGTTTCTCTCTGTTAGGTCATGTTTATTAGCTATAACACACCTAGGCATATGA 240 consensus_1636#1 AATACAAAACCTGCTGAAAATGTATCATTATCTTCGGATTTATCA-ACCAAAGC---TGA 213 * ** * * **** * * * * ** ** *** * ** *** consensus_1636#0 TAGAGTAGTCAATTTTAGGTGTAAATAGTTGTTTGTCTTCCCCAGTCTTCATACTATTCT 300 consensus_1636#1 TTCTGTAAC---TTTTCAGCAACCAGAGGTGA---------CCTGTATTGATAATACCGA 261 * *** **** * * ** ** ** ** ** *** ** consensus_1636#0 GCGTTACTACCGCACTGAGTGTAAGTTTACACGATCATGGGTGCCAGGTTGTTTTACAAT 360 consensus_1636#1 ACGTTTGTATGTTAACATGCGTGAG---GCACGAATACAAATAGAAGA-------ACAAC 311 **** ** * * ** ** ***** * * ** **** consensus_1636#0 GAGTATCCTGGATCATTTAGTCAAATTAGTAGGTCACTGCATCCCTTCCTGATCTGAATT 420 consensus_1636#1 GG--AATCGATATGATCGGATCACTTCAACTGGAATCAATA----ATACCAATTCTAGC- 364 * * * ** ** *** * * ** * * * * ** * consensus_1636#0 GTTGAAAATCCTTCTTATTACGTGAAAGTACACTATTTACCAGTGATGTCGTTGGTTTGT 480 consensus_1636#1 GCTCAAAAACCATTGCAGCATGTCA----------------------------------- 389 * * **** ** * * * ** * consensus_1636#0 TCAAATAACACTGGATTTACAATT 504 consensus_1636#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||