These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [TAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGGAGCATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATTCACCCAATTAGACAGAATGTTGTGCTGATATGTGATTTGTTCACAACCAGAAACGGGCAAAACTTTACTTTCAGTCAGATAAGTAATTTGATCGTAAGTGGCAAACTGCAAAATATGAGTCCGAAAATCCAGTGTAGGGCTATGAAGCACCATTGAAGCAATAGCTCCTGGACCAAAGTGTTTATAATGTATTTTGACAATGTCTTTTATTATGCGACATATATAAGGATCACTCCTCCAATTTAATTGGGCGATACCGCGTGT] [+] EMBL CD158498 [TAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGGAGCATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATTCACCCAATTAGACAGAATGTTGTGCTGATATGTGATTTGTTCACAACCAGAAACGGGCAAAACTTTACTTTCAGTCAGATAAGTAATTTGATCGTAAGTGGCAAACTGCAAAATATGAGTCCGAAAATCCAGTGTAGGGCTATGAAGCACCATTGAAGCAATAGCTCCTGGACCAAAGTGTTTATAATGTATTTTGACAATGTCTTTTATTATGCGACATATATAAGGATCACTCCTCCAATTTAATTGGGCGATACCGCGTGT] consensusID : consensus_1647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [CGTCTCTCACTAATGTGAACAGGCTGAAAGAAATACTATTTTAGACCAAAATATGCGACAAGATTGCATGAAGGATCCATGGTTTTCTTATCCAGGTTACAGCAGAGCTCGAGGATACGAGATCTTGTTTCCTTACAAGTCACCGATGCGACTGCTTCTTTATACATTTTAAGAATATGTATACTGTGTTTGCGGCTATCAGAATTTAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGGAGCATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATTCACCCAATTAGACAGAATGTTGTGCTGCCTCGGACCGAA] [-] EMBL CD077803 [CGTCTCTCACTAATGTGAACAGGCTGAAAGAAATACTATTTTAGACCAAAATATGCGACAAGATTGCATGAAGGATCCATGGTTTTCTTATCCAGGTTACAGCAGAGCTCGAGGATACGAGATCTTGTTTCCTTACAAGTCACCGATGCGACTGCTTCTTTATACATTTTAAGAATATGTATACTGTGTTTGCGGCTATCAGAATTTAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGGAGCATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATTCACCCAATTAGACAGAATGTTGTGCTGCCTCGGACCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1647#0 TAATGCGCTAGTTAAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGG 60 consensus_1647#1 --------------------------CGTCTCTCACTAATGT-GAACAGGCTGAAA--GA 31 ** * ** ** * * ** ** *** * consensus_1647#0 AGCATCACTCAGGTAAATACCACTTGA-ATGAGTATTGGAGAATATTGCATATGCGAAAT 119 consensus_1647#1 AATACTATTTTAGACCAAAATATGCGACAAGATTGCATGAAGGATCCATGGTTTTCTTAT 91 * * * * * * * * ** * ** * ** * ** consensus_1647#0 TCACCCAATTAGACAGAATGTTGTGCTGATATGTGATTTGTTCACAAC---CAGAAACGG 176 consensus_1647#1 CCAGGTTACAGCAGAGCTCGAGGATACGAGATCTTGTTTCCTTACAAGTCACCGATGCGA 151 ** * * ** * * ** ** * *** * **** * ** ** consensus_1647#0 GCAAAACTTTAC---TTTCAGTCAGATAAGTAATTTGATCGTAAGTGGCAAACTGCAAAA 233 consensus_1647#1 CTGCTTCTTTATACATTTTAAGAATATGTATACTGTGTTTGCGGCTATCAGAATTTAATG 211 ***** *** * * ** ** * ** * * * ** * * ** consensus_1647#0 TATGAGTCCGAAAATCCAGTGTAGGGCTATGAAGCACCATTGAAGCAATAGCTCCTGGAC 293 consensus_1647#1 CGCTAGTT---AAATCTTTCAAGGTGTTTGACAATAGAATAGGGCAAACTAAAAATGGAG 268 *** ***** * * * * * ** * ** **** consensus_1647#0 CAAAGTGTTTATAA-TGTATTTTGACAATGTCTTTTATTATGCGACATATATAAGGATCA 352 consensus_1647#1 CATCACTCAGGTAAATACCACTTGAATGAGTATTGGAGAATATTGCATATGCGAAATTCA 328 ** *** * **** ** ** * ** ***** * *** consensus_1647#0 CTCCTCCAATTTAATTGG-GCGATACCGCGTGT---- 384 consensus_1647#1 CCCAATTAGACAGAATGTTGTGCTGCCTCGGACCGAA 365 * * * * ** * * * ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||