cluster # 1665

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Schistosoma mansoni
cluster # 1665 cluster # 1665 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1665#0 length = 560 sequences # 1

consensus_1665#1 length = 179 sequences # 1

consensusID : consensus_1665#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [CGCTGCAGATGAAGGAGTACCAATCAGTCAACAATGGGATTCTCGCGGTTATCCGTATCCAATTCAAATAGCACAATTTGGTTTGAATCATTTCAGTAAATTAGTAATATCATCTGATCGAGCAAAATTTGAAAAATCTGAAAATGTTTTGTCGTTAGACAACAAAAATATGGAGTTAGATCTTATTGTTCCCAGTGATAATATAATTCATCGTTGGACTGATAGAGAGTTTATACATAAATGGAATGACAAACTTATATTATCAGTTGGTAAACTAAACTCCTATGGTCAAGCATTGTCAATAATCCCAAAGCTTCAAGAATGGGATTATCTCATTATGATTGGTCGTCAGTGGACATATGGAAGCTATATTGAATTATCACTTTTATGGTATCCTCCAGTTGGAAGATCCAAGAATTACCCTACAAAAAGTCTAGTTGTATACAATTGTTCATCATCTCCAATTAGACATCAAACCTATGCTACTATCATTCATAATAATAAAGTCACATATTGGATGCCTGAATGTGAAAGACAAGCCAAGATGTATGGATNTGTTG]

[+] EMBL CD191918             [CGCTGCAGATGAAGGAGTACCAATCAGTCAACAATGGGATTCTCGCGGTTATCCGTATCCAATTCAAATAGCACAATTTGGTTTGAATCATTTCAGTAAATTAGTAATATCATCTGATCGAGCAAAATTTGAAAAATCTGAAAATGTTTTGTCGTTAGACAACAAAAATATGGAGTTAGATCTTATTGTTCCCAGTGATAATATAATTCATCGTTGGACTGATAGAGAGTTTATACATAAATGGAATGACAAACTTATATTATCAGTTGGTAAACTAAACTCCTATGGTCAAGCATTGTCAATAATCCCAAAGCTTCAAGAATGGGATTATCTCATTATGATTGGTCGTCAGTGGACATATGGAAGCTATATTGAATTATCACTTTTATGGTATCCTCCAGTTGGAAGATCCAAGAATTACCCTACAAAAAGTCTAGTTGTATACAATTGTTCATCATCTCCAATTAGACATCAAACCTATGCTACTATCATTCATAATAATAAAGTCACATATTGGATGCCTGAATGTGAAAGACAAGCCAAGATGTATGGATNTGTTG]




>consensus_1665#0
CGCTGCAGATGAAGGAGTACCAATCAGTCAACAATGGGATTCTCGCGGTTATCCGTATCC
AATTCAAATAGCACAATTTGGTTTGAATCATTTCAGTAAATTAGTAATATCATCTGATCG
AGCAAAATTTGAAAAATCTGAAAATGTTTTGTCGTTAGACAACAAAAATATGGAGTTAGA
TCTTATTGTTCCCAGTGATAATATAATTCATCGTTGGACTGATAGAGAGTTTATACATAA
ATGGAATGACAAACTTATATTATCAGTTGGTAAACTAAACTCCTATGGTCAAGCATTGTC
AATAATCCCAAAGCTTCAAGAATGGGATTATCTCATTATGATTGGTCGTCAGTGGACATA
TGGAAGCTATATTGAATTATCACTTTTATGGTATCCTCCAGTTGGAAGATCCAAGAATTA
CCCTACAAAAAGTCTAGTTGTATACAATTGTTCATCATCTCCAATTAGACATCAAACCTA
TGCTACTATCATTCATAATAATAAAGTCACATATTGGATGCCTGAATGTGAAAGACAAGC
CAAGATGTATGGATNTGTTG

consensusID : consensus_1665#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [AATTCGTCACGAGGCTTATTGTTCCCAGTGATAATATAATTCATCGTTGGACTGATAGAGAGTTTATACATAAATGGAATGACAAACTTATATTATCAGTTGGTAAACTAAACTCCTATGGTCAAGCATTGTCAATAATCCCAAAGCTTCAAGAATGGGATTATCTCATTTATGATTGG]

[+] EMBL CD077906             [AATTCGTCACGAGGCTTATTGTTCCCAGTGATAATATAATTCATCGTTGGACTGATAGAGAGTTTATACATAAATGGAATGACAAACTTATATTATCAGTTGGTAAACTAAACTCCTATGGTCAAGCATTGTCAATAATCCCAAAGCTTCAAGAATGGGATTATCTCATTTATGATTGG]




>consensus_1665#1
AATTCGTCACGAGGCTTATTGTTCCCAGTGATAATATAATTCATCGTTGGACTGATAGAG
AGTTTATACATAAATGGAATGACAAACTTATATTATCAGTTGGTAAACTAAACTCCTATG
GTCAAGCATTGTCAATAATCCCAAAGCTTCAAGAATGGGATTATCTCATTTATGATTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1665#0      CGCTGCAGATGAAGGAGTACCAATCAGTCAACAATGGGATTCTCGCGGTTATCCGTATCC 60
consensus_1665#1      ------------------------------------------------------------
                                                                                  

consensus_1665#0      AATTCAAATAGCACAATTTGGTTTGAATCATTTCAGTAAATTAGTAATATCATCTGATCG 120
consensus_1665#1      ------------------------------------------------------------
                                                                                  

consensus_1665#0      AGCAAAATTTGAAAAATCTGAAAATGTTTTGTCGTTAGACAACAAAAATATGGAGTTAGA 180
consensus_1665#1      ----------------------------------------------AATTCGTCACGAGG 14
                                                                    ***  *     ** 

consensus_1665#0      TCTTATTGTTCCCAGTGATAATATAATTCATCGTTGGACTGATAGAGAGTTTATACATAA 240
consensus_1665#1      -CTTATTGTTCCCAGTGATAATATAATTCATCGTTGGACTGATAGAGAGTTTATACATAA 73
                       ***********************************************************

consensus_1665#0      ATGGAATGACAAACTTATATTATCAGTTGGTAAACTAAACTCCTATGGTCAAGCATTGTC 300
consensus_1665#1      ATGGAATGACAAACTTATATTATCAGTTGGTAAACTAAACTCCTATGGTCAAGCATTGTC 133
                      ************************************************************

consensus_1665#0      AATAATCCCAAAGCTTCAAGAATGGGATTATCTCATT-ATGATTGGTCGTCAGTGGACAT 359
consensus_1665#1      AATAATCCCAAAGCTTCAAGAATGGGATTATCTCATTTATGATTGG-------------- 179
                      ************************************* ********              

consensus_1665#0      ATGGAAGCTATATTGAATTATCACTTTTATGGTATCCTCCAGTTGGAAGATCCAAGAATT 419
consensus_1665#1      ------------------------------------------------------------
                                                                                  

consensus_1665#0      ACCCTACAAAAAGTCTAGTTGTATACAATTGTTCATCATCTCCAATTAGACATCAAACCT 479
consensus_1665#1      ------------------------------------------------------------
                                                                                  

consensus_1665#0      ATGCTACTATCATTCATAATAATAAAGTCACATATTGGATGCCTGAATGTGAAAGACAAG 539
consensus_1665#1      ------------------------------------------------------------
                                                                                  

consensus_1665#0      CCAAGATGTATGGATNTGTTG 560
consensus_1665#1      ---------------------