These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_172#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [AGATTCAGACAGAATATGGGATTCCGAATGGAACCGAAGTTGTGTCGAAGGCTGTCAACGACGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGAAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAATAACACAGGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGCGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTA] [+] EMBL CD126661 [AGATTCAGACAGAATATGGGATTCCGAATGGAACCGAAGTTGTGTCGAAGGCTGTCAACGACGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGAAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAATAACACAGGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGCGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTA] consensusID : consensus_172#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTACTGTTACAAAATATTTACTTTAAAAACATAATAGAAGTGAATTAATGTAACATGATTTCGGTTATCGTTTTGGTAAAGGTTAGATCAAACAAAGAGTAGATATTCCGCATTATCAAATGATCGTTTCCAAACGTTTGATTAACGCCTTCCATATTTCTTAGACGAATATCTACACTAGATTCCCACCCAGTGTCTATTCTACAAGACTTCAACACAACTCAGATCAAGAACA] [+] EMBL AI395144 [TTTTTTTTTTTTTTTTTTTTTTTTTTTACTGTTACAAAATATTTACTTTAAAAACATAATAGAAGTGAATTAATGTAACATGATTTCGGTTATCGTTTTGGTAAAGGTTAGATCAAACAAAGAGTAGATATTCCGCATTATCAAATGATCGTTTCCAAACGTTTGATTAACGCCTTCCATATTTCTTAGACGAATATCTACACTAGATTCCCACCCAGTGTCTATTCTACAAGACTTCAACACAACTCAGATCAAGAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_172#0 AGATTCAGACAGAATATGGGATTCCGAATGGAACCGAAGTTGTGTCGAAGGCTGTCAACG 60 consensus_172#1 ----------------------------------------------------TTTTTTTT 8 * * consensus_172#0 ACGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACG 120 consensus_172#1 TTTTTTTTTTTTTTTTTTTACTGTT-----ACAAAATATTTAC---TTTAA--AAACATA 58 ** * * * * ** * * * ** *** ** * * ** * consensus_172#0 TCACTACTAGACCGGCACACAAGGATACTGGC-ATTGATCCGATTCACGTGTGGGAAAAG 179 consensus_172#1 ATAGAAGTGAATTAATGTAACATGATTTCGGTTATCGTTTTGGT--AAAGGTTAGATCAA 116 * * * * * * *** ** ** * * * * * ** ** * consensus_172#0 AAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAATAACACAG 239 consensus_172#1 ACAAAGAGTAGATATTCCGCATTATCAAATGATCGTTTCCAAACGTTTGAT-TAACGCCT 175 * ** * * ** ** ** * * * ** ** * * **** * consensus_172#0 GCTGCATCTTCAAGAACAACGC--GCCTCAATGTTTCATGCTGCGATC-TGCTAATGCAC 296 consensus_172#1 TCCATATTTCTTAGACGAATATCTACACTAGATTCCCACCCAGTGTCTATTCTACAAGAC 235 * ** * *** ** * * * ** * * * * *** ** consensus_172#0 CTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTA 340 consensus_172#1 TTCAACACAACTCAGATCAAGAACA------------------- 260 * ** *** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||