These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [AGAAAGTGACGAGCGAGACATAGCATCGTCGAAGACAAGAGGTGAATGACTGTGACTCAAGGCCTGGAGCCAAAACAGTAAAATGAGGTCAGATGACGATAATTCAGTTTTTTTTTAAAAAAAAAAACAAGTTTATGGTGAATATAAACCAAGAACATACCCATGACATGTACTCATTGATCATATTTCGTGGTTCTTTGAATCTAAAACAAGAAAATCAATTTAAAGACTCCTAACTTACGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGGCCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTTTGTCCAAGATGACTGTAGCATTGACTAAACAACTTCTTTCCAGCAAAAATACAATTCCCCATTGTGTCTTGTAATAGGTTACT] [+] EMBL CD160140 [AGAAAGTGACGAGCGAGACATAGCATCGTCGAAGACAAGAGGTGAATGACTGTGACTCAAGGCCTGGAGCCAAAACAGTAAAATGAGGTCAGATGACGATAATTCAGTTTTTTTTTAAAAAAAAAAACAAGTTTATGGTGAATATAAACCAAGAACATACCCATGACATGTACTCATTGATCATATTTCGTGGTTCTTTGAATCTAAAACAAGAAAATCAATTTAAAGACTCCTAACTTACGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGGCCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTTTGTCCAAGATGACTGTAGCATTGACTAAACAACTTCTTTCCAGCAAAAATACAATTCCCCATTGTGTCTTGTAATAGGTTACT] consensusID : consensus_1737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [TTGATTTATTTAACGGATCTAATTCTTTATACAATACATGAGAAGCATCACTGCGCGCCCCATCACTAACCCAACTAGAAGAAATTGGTATACTTGACTCATCAAAATGCGAAGAAAGTGACGAGCGAGACATAGCATCGTCGAAGACAGGAGGTGAATGACTGTGACTCAAGGCCCATGACATGTACTCATTGATCATATTTCGTGGTTCTTTGAATGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGGCCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTTTGTCCAAGATGACTGTAGCATCTACTGACTAAACAACTTCTTTCCAGCAAAAATACAATTCCCCATTGTGTTTTGTAATA] [+] EMBL CD062271 [TTGATTTATTTAACGGATCTAATTCTTTATACAATACATGAGAAGCATCACTGCGCGCCCCATCACTAACCCAACTAGAAGAAATTGGTATACTTGACTCATCAAAATGCGAAGAAAGTGACGAGCGAGACATAGCATCGTCGAAGACAGGAGGTGAATGACTGTGACTCAAGGCCCATGACATGTACTCATTGATCATATTTCGTGGTTCTTTGAATGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGGCCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTTTGTCCAAGATGACTGTAGCATCTACTGACTAAACAACTTCTTTCCAGCAAAAATACAATTCCCCATTGTGTTTTGTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1737#0 AGAAAGTGACGAGCGAGACATAG-CATCGTCGAAGACAAGAGGTGAATGACTGTGACTCA 59 consensus_1737#1 TTGATTTATTTAACGGATCTAATTCTTTATACAATACATGAGAAGCATCACTGCGC---- 56 * * * ** * * * * * ** *** *** * ** **** * consensus_1737#0 AGGCCTGGAGCCAAAACAGTAAAATGAGGTCAGATGACGATAATTCAGTTTTTTTTTAAA 119 consensus_1737#1 -GCCCCATCACTAACCCAACTAGAAGAAATTGGT-----ATACTTGA----CTCATCAAA 106 * ** * ** ** * * ** * * *** ** * * * *** consensus_1737#0 AAAAAAAACAAGTTTATGGTGAATATAAACCAAGAACATACCCATGACATGTACTCATTG 179 consensus_1737#1 ATGCGAAGAAAGT----GACGAGCGAGACATAGCATCGT--CGAAGACAGGAGGTGAATG 160 * ** **** * ** * * * * * * * **** * * * ** consensus_1737#0 ATCATATTTCGTGGTTCTTTGAATCTAAAACAAGAAAATCAATTTAAAGACTCCTAACTT 239 consensus_1737#1 ACTGTGACTCAAGGCCCATGACATGTACTCATTGATCAT--ATTTCGTGGTTCTTTGA-- 216 * * ** ** * * ** ** ** ** **** * ** * consensus_1737#0 ACGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGG 299 consensus_1737#1 ATGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGG 276 * ********************************************************** consensus_1737#0 CCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTT 359 consensus_1737#1 CCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTT 336 ************************************************************ consensus_1737#0 TGTCCAAGATGACTGTAGCAT----TGACTAAACAACTTCTTTCCAGCAAAAATACAATT 415 consensus_1737#1 TGTCCAAGATGACTGTAGCATCTACTGACTAAACAACTTCTTTCCAGCAAAAATACAATT 396 ********************* *********************************** consensus_1737#0 CCCCATTGTGTCTTGTAATAGGTTACT 442 consensus_1737#1 CCCCATTGTGTTTTGTAATA------- 416 *********** ******** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||