cluster # 1748

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Schistosoma mansoni
cluster # 1748 cluster # 1748 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1748#0 length = 610 sequences # 1

consensus_1748#1 length = 563 sequences # 1

consensusID : consensus_1748#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [CGCGAAATTAAGGGTGCAGTGCTCGAAGCCCTACTGCTTCAGCCTATAGATTTGTTTATCAGATTGTCCTAATCCCACTTTTGTGTTATTTTTGACTATCGCTAATTACTTTTTTGAATAAATCTCCAAATTAGTCTAAATATGTCAACCTCAAGAACATATGAATCAATGAAGAAATTACTTGAATGTGCTAAATTGGATATCTCTTTCACATCAAACATATTTCAGTCAGTGAAATTTGACTGTCCATTATTATCCGAAGAGTACAAATTGATTGAAGTGCCGAATTGGTTAGCCGATGAAGTGATGCATAAAAAAGAGAACCAAGCTATAACTTTAAAAAGTGAACATAAACCTAATAATACAGGGCGTGTATTTGCTTGCATAAGTGACAAAACGTTTTCGGTTATAGAAGCAAAAACGTCTAATACACTCCTTTTAGCCTCTAATTGGTGTCTGCCTTCATCCGATAGGCCTAAAGAGAATTTAGTACTTGTTACACCAATTCAAGCTGTCAAAAATAATTACTTTGAACTTCAGCAATGTTCAGCTCCATCTTTANAACAACTGAGGCTTTTGNTATCTTCATCTCTTTACTATGGNCCTGTTG]

[+] EMBL CD078427             [CGCGAAATTAAGGGTGCAGTGCTCGAAGCCCTACTGCTTCAGCCTATAGATTTGTTTATCAGATTGTCCTAATCCCACTTTTGTGTTATTTTTGACTATCGCTAATTACTTTTTTGAATAAATCTCCAAATTAGTCTAAATATGTCAACCTCAAGAACATATGAATCAATGAAGAAATTACTTGAATGTGCTAAATTGGATATCTCTTTCACATCAAACATATTTCAGTCAGTGAAATTTGACTGTCCATTATTATCCGAAGAGTACAAATTGATTGAAGTGCCGAATTGGTTAGCCGATGAAGTGATGCATAAAAAAGAGAACCAAGCTATAACTTTAAAAAGTGAACATAAACCTAATAATACAGGGCGTGTATTTGCTTGCATAAGTGACAAAACGTTTTCGGTTATAGAAGCAAAAACGTCTAATACACTCCTTTTAGCCTCTAATTGGTGTCTGCCTTCATCCGATAGGCCTAAAGAGAATTTAGTACTTGTTACACCAATTCAAGCTGTCAAAAATAATTACTTTGAACTTCAGCAATGTTCAGCTCCATCTTTANAACAACTGAGGCTTTTGNTATCTTCATCTCTTTACTATGGNCCTGTTG]




>consensus_1748#0
CGCGAAATTAAGGGTGCAGTGCTCGAAGCCCTACTGCTTCAGCCTATAGATTTGTTTATC
AGATTGTCCTAATCCCACTTTTGTGTTATTTTTGACTATCGCTAATTACTTTTTTGAATA
AATCTCCAAATTAGTCTAAATATGTCAACCTCAAGAACATATGAATCAATGAAGAAATTA
CTTGAATGTGCTAAATTGGATATCTCTTTCACATCAAACATATTTCAGTCAGTGAAATTT
GACTGTCCATTATTATCCGAAGAGTACAAATTGATTGAAGTGCCGAATTGGTTAGCCGAT
GAAGTGATGCATAAAAAAGAGAACCAAGCTATAACTTTAAAAAGTGAACATAAACCTAAT
AATACAGGGCGTGTATTTGCTTGCATAAGTGACAAAACGTTTTCGGTTATAGAAGCAAAA
ACGTCTAATACACTCCTTTTAGCCTCTAATTGGTGTCTGCCTTCATCCGATAGGCCTAAA
GAGAATTTAGTACTTGTTACACCAATTCAAGCTGTCAAAAATAATTACTTTGAACTTCAG
CAATGTTCAGCTCCATCTTTANAACAACTGAGGCTTTTGNTATCTTCATCTCTTTACTAT
GGNCCTGTTG

consensusID : consensus_1748#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [TTTGTTATCTTCATCTCTTTACTATGGTCCTGTTGATGATGAGTGTGATTCGAAGAATAAAAGCTCTAATCTCAGCTATTTTGATCGTGATACTGTTGAAACCCGACTGCCATGCAGTAAGCTGGAGCTTAATGAGGCGTTTCGACGATTGCACGTATGTGAAATCAATGGATATTTACGAATGCTTGATCATGAATACATGACACAGCGTCTGTCTCACATTCTCATCTCTGCAATTAACTGATTTGCTGGAAGCTATCCTTTTTATGCAAAGTTTATTAATACTTTCCGTTATCAGTAATGTCTATTATGTATCAGATATGTCGAAATGTAGTTAGAGATCTTTTTGCCCTTGCTGATGAAAATGCATGGGACTGGCGTAAATATGGCTTCCCTTTGCATGCCTCAATAGAAGGCTTAGCAAATCAACACCTTCCAAATATTACCAAGCAAATTATGATGTTAATTTGTTCTCAGTTAGGAAATCGAAAAGCACTCGATTCTAAAGATGTGTACGTTTACCCGCGGAATTCGAAAATTTGTCAAATAGTTGGGGAACATCT]

[+] EMBL CD147185             [TTTGTTATCTTCATCTCTTTACTATGGTCCTGTTGATGATGAGTGTGATTCGAAGAATAAAAGCTCTAATCTCAGCTATTTTGATCGTGATACTGTTGAAACCCGACTGCCATGCAGTAAGCTGGAGCTTAATGAGGCGTTTCGACGATTGCACGTATGTGAAATCAATGGATATTTACGAATGCTTGATCATGAATACATGACACAGCGTCTGTCTCACATTCTCATCTCTGCAATTAACTGATTTGCTGGAAGCTATCCTTTTTATGCAAAGTTTATTAATACTTTCCGTTATCAGTAATGTCTATTATGTATCAGATATGTCGAAATGTAGTTAGAGATCTTTTTGCCCTTGCTGATGAAAATGCATGGGACTGGCGTAAATATGGCTTCCCTTTGCATGCCTCAATAGAAGGCTTAGCAAATCAACACCTTCCAAATATTACCAAGCAAATTATGATGTTAATTTGTTCTCAGTTAGGAAATCGAAAAGCACTCGATTCTAAAGATGTGTACGTTTACCCGCGGAATTCGAAAATTTGTCAAATAGTTGGGGAACATCT]




>consensus_1748#1
TTTGTTATCTTCATCTCTTTACTATGGTCCTGTTGATGATGAGTGTGATTCGAAGAATAA
AAGCTCTAATCTCAGCTATTTTGATCGTGATACTGTTGAAACCCGACTGCCATGCAGTAA
GCTGGAGCTTAATGAGGCGTTTCGACGATTGCACGTATGTGAAATCAATGGATATTTACG
AATGCTTGATCATGAATACATGACACAGCGTCTGTCTCACATTCTCATCTCTGCAATTAA
CTGATTTGCTGGAAGCTATCCTTTTTATGCAAAGTTTATTAATACTTTCCGTTATCAGTA
ATGTCTATTATGTATCAGATATGTCGAAATGTAGTTAGAGATCTTTTTGCCCTTGCTGAT
GAAAATGCATGGGACTGGCGTAAATATGGCTTCCCTTTGCATGCCTCAATAGAAGGCTTA
GCAAATCAACACCTTCCAAATATTACCAAGCAAATTATGATGTTAATTTGTTCTCAGTTA
GGAAATCGAAAAGCACTCGATTCTAAAGATGTGTACGTTTACCCGCGGAATTCGAAAATT
TGTCAAATAGTTGGGGAACATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1748#0      CGCGAAATTAAGGGTGCAGTGCTCGAAGCCCTACTGCTTCAGCCTATAGATTTGTTTATC 60
consensus_1748#1      --------------------TTTGTTATCTTCATCTCTTTA--CTATGGTCCTGTTGAT- 37
                                            *   * *   *   *** *  **** *   **** ** 

consensus_1748#0      AGATTGTCCTAATCCCACTTTTGTGTTATTTTTGACTATCGCTAATTACTTTTTTGAATA 120
consensus_1748#1      -GATGAGTGTGATTCGAAGAATAAA--AGCTCTAATCTCAGCTATT---TTGATCGTGAT 91
                       ***     * ** * *    *     *  * * *     **** *   **  * *    

consensus_1748#0      AATCTCCAAATTAGTCTAA-ATATGTCAACCTCAAGAACATATGAATCAATGAAGAAATT 179
consensus_1748#1      ACTGTTGAAACCCGACTGCCATGCAGTAAGCTGGAGCTTA-ATGAGGCGTTTCGACGATT 150
                      * * *  ***   * **   **     ** **  **   * ****  *  *      ***

consensus_1748#0      ACTTGAATGTGCTAA-ATTGGATATCTCTTTCACATCAAACATATTTCAGTCAGTGAAAT 238
consensus_1748#1      GCACGTATGTGAAATCAATGGATATTTACGAATGCTTGATCATGAATACATGACACAGCG 210
                       *  * *****  *  * ******* *        *  * ***   *   * *   *   

consensus_1748#0      TTGACTGTCCATTATTATCCGAAGAGTACAAATTGATTGAAGTGCCGAATTGGTTAGCCG 298
consensus_1748#1      TCTGTCTCACATTCTCATCTC-----TGCAA-TTAACTGATTTGCTGGA--AGCTATCCT 262
                      *        **** * ***       * *** ** * ***  *** * *   * ** ** 

consensus_1748#0      ATGAA-GTGATGCATAAAAAAGAGAACCA--AGCTATAACTTTAAAAAGTGAACATAAAC 355
consensus_1748#1      TTTTATGCAAAGTTTATTAATACTTTCCGTTATCAGTAATGTCTATTATGTATCAGATAT 322
                       *  * *  * *  **  **      **   * *  ***  *  *  *   * ** * * 

consensus_1748#0      CTAATAATACAG---GGCGTGTATTTGCTTGCATAAGTGACAAAACGTTTT-CGGTTATA 411
consensus_1748#1      GTCGAAATGTAGTTAGAGATCTTTTTGCCCTTGCTGATGAAAATGCATGGGACTGGCGTA 382
                       *   ***  **   *   * * *****         *** **  * *    * *   **

consensus_1748#0      GAAGCAAAAACGTCTAATACACTCCTTTTAGCCTCTAATTGGTGTCTGCCTTCATCCGAT 471
consensus_1748#1      AATATGGCTTCCCTTTGCATGCCTCAATAGAAGGCTTAGCAA-ATCAACACCTTCCAAAT 441
                       *        *   *   *  *  *  *      ** *      **  *      *  **

consensus_1748#0      AGGCCTAAAGAGAATTTAGTACTTGTT-ACACCAATTCAAGCTGTCAAAAATAATTACTT 530
consensus_1748#1      ATTACCAAGCAAATTATGATGTTAATTTGTTCTCAGTTAGGAAATCGAAAA-----GCAC 496
                      *   * **  * * * *  *  *  **    *  * * * *   ** ****      *  

consensus_1748#0      TGAACTTCAGCAATGTTCAGCTCCATCTTTANAACAACTGAGGCTTTTGNTATCTTCATC 590
consensus_1748#1      TCGATTCTAAAGATGTGTACGTTTACCCGCGGAATT-CGAAAATTTGTCAAATAGTTGGG 555
                      *  * *  *   ****  *  *  * *     **   *  *   ** *   **  *    

consensus_1748#0      TCTTTACTATGGNCCTGTTG 610
consensus_1748#1      GAACATCT------------ 563
                            **