Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1763 cluster # 1763       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1763#0 length = 344 sequences # 1  
consensus_1763#1 length = 305 sequences # 1  

consensusID : consensus_1763#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence
                              [CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA]

[+] EMBL CD145072             [CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA]


>consensus_1763#0 CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCA TTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAG TCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAAC CACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATA ACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGA AGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA



consensusID : consensus_1763#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence
                              [ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCAG]

[-] EMBL CD145148             [ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCAG]


>consensus_1763#1 ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCAT TTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGT CTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACC ACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAA CTAACATTGCCCTCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGC GGCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1763#0      CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCA 60
consensus_1763#1      -ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCA 59
                       ************************************************* *********

consensus_1763#0      TTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAG 120
consensus_1763#1      TTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAG 119
                      ************************************************************

consensus_1763#0      TCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAAC 180
consensus_1763#1      TCTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAAC 179
                      ****************** *****************************************

consensus_1763#0      CACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATA 240
consensus_1763#1      CACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATA 239
                      ************************************************************

consensus_1763#0      ACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGA 300
consensus_1763#1      ACTAACATTGCCCTC---------------------------------------CACTGA 260
                      ***************                                       ******

consensus_1763#0      AGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA- 344
consensus_1763#1      AGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCAG 305
                      ******************************************** 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)