These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1763#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA] [+] EMBL CD145072 [CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA] consensusID : consensus_1763#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCAG] [-] EMBL CD145148 [ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1763#0 CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCA 60 consensus_1763#1 -ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCA 59 ************************************************* ********* consensus_1763#0 TTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAG 120 consensus_1763#1 TTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAG 119 ************************************************************ consensus_1763#0 TCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAAC 180 consensus_1763#1 TCTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAAC 179 ****************** ***************************************** consensus_1763#0 CACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATA 240 consensus_1763#1 CACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATA 239 ************************************************************ consensus_1763#0 ACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGA 300 consensus_1763#1 ACTAACATTGCCCTC---------------------------------------CACTGA 260 *************** ****** consensus_1763#0 AGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA- 344 consensus_1763#1 AGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCAG 305 ******************************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||