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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1765 cluster # 1765       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1765#0 length = 612 sequences # 1  
consensus_1765#1 length = 427 sequences # 1  

consensusID : consensus_1765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence
                              [AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACGGTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCCAAATATATAGCTAATGAACAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCAGAGAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGTGCCTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTTCCTTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTAACGGAGCGGAGCTA]

[+] EMBL CD078482             [AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACGGTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCCAAATATATAGCTAATGAACAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCAGAGAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGTGCCTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTTCCTTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTAACGGAGCGGAGCTA]


>consensus_1765#0 AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAA GTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTA AATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAA AGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAA GTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACG GTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCCAAATATAT AGCTAATGAACAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCAGA GAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGTGC CTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTTCC TTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTAAC GGAGCGGAGCTA



consensusID : consensus_1765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence
                              [AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGGCAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACNGTGACNACTGCCTTCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATATAGCTAATGAAACNAAATCCCGGNTATCNNTAATGGTATAATTCCCTTAAANTGAACCATTTNCNCTTTTTATCCCAATT]

[+] EMBL AW466256             [AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGGCAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACNGTGACNACTGCCTTCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATATAGCTAATGAAACNAAATCCCGGNTATCNNTAATGGTATAATTCCCTTAAANTGAACCATTTNCNCTTTTTATCCCAATT]


>consensus_1765#1 AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGGCAGTGC AATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCG CAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGC CAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCT TAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACNGTGACNACTGCCT TCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATATAGCTAATGAAAC NAAATCCCGGNTATCNNTAATGGTATAATTCCCTTAAANTGAACCATTTNCNCTTTTTAT CCCAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1765#0      AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAA 60
consensus_1765#1      -------------AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAA 47
                                   ***********************************************

consensus_1765#0      GTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTA 120
consensus_1765#1      GTAACGGCAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTA 107
                      ****** *****************************************************

consensus_1765#0      AATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAA 180
consensus_1765#1      AATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAA 167
                      ************************************************************

consensus_1765#0      AGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAA 240
consensus_1765#1      AGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAA 227
                      ************************************************************

consensus_1765#0      GTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACG 300
consensus_1765#1      GTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACN 287
                      *********************************************************** 

consensus_1765#0      GTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCC-AAATATA 359
consensus_1765#1      GTGACNACTGCCTTCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATA 347
                      ***** ******************* ****** ******************* *******

consensus_1765#0      TAGCTAATGAA-CAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCA 418
consensus_1765#1      TAGCTAATGAAACNAAATCCCGGNTATCNNTAATGGTATAATTCCCT-TAAANTGAACCA 406
                      *********** * ********* ****  **     ** *    ** * ** *   ***

consensus_1765#0      GAGAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGT 478
consensus_1765#1      TTTNCNCTTTTTATCCCAATT--------------------------------------- 427
                             *   ** **  * *                                       

consensus_1765#0      GCCTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTT 538
consensus_1765#1      ------------------------------------------------------------
                                                                                  

consensus_1765#0      CCTTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTA 598
consensus_1765#1      ------------------------------------------------------------
                                                                                  

consensus_1765#0      ACGGAGCGGAGCTA 612
consensus_1765#1      --------------
                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)