cluster # 1790

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Schistosoma mansoni
cluster # 1790 cluster # 1790 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1790#0 length = 580 sequences # 1

consensus_1790#1 length = 351 sequences # 1

consensusID : consensus_1790#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [ACGTATAATAAAACATAGATTGGTATTCACGCTCTTGGAGCACGTCGTGAGATTTTGAGGCAGATTGGTTTGTACAAAATGAAAACAAATGATGAAGACAAGACGTTAAATACGATAGAATCACTTCCGATACCGTATGTAACACCATCAGCTCCAGAGGCTACATTATCAAGTATTGTTGTATCTGACGAAGTTGTGGCTCGTATGGAAAATGAGTGTTGTGTATGTCAAGATGCAATATGCTCAACGATATTCCTTCCATGTGGTCATGTCTGTTGTTGCAAGAAATGTTCTGAAAGTGTTCTTGATTGTCCACTGTGTCGTTCCAACATACACAATCGAATTCAATTACATTTTTGATTATGGTAAAACTAGGTAAAGTAATTTTTCTGCTATCAATCAGTTTTTGCTGCCATTATATATATATATATATATATATATATATATATATATATAGAACGCAGCCGAGTCCAGAAATCTTAACTTCTCTTAACATTTTTCTAACTTTCAATGCTTTGCTAATCACATANACTTACATTACATAACTATGAATAGAATTTTTAACAGTGAATGTACTATT]

[+] EMBL CD078781             [ACGTATAATAAAACATAGATTGGTATTCACGCTCTTGGAGCACGTCGTGAGATTTTGAGGCAGATTGGTTTGTACAAAATGAAAACAAATGATGAAGACAAGACGTTAAATACGATAGAATCACTTCCGATACCGTATGTAACACCATCAGCTCCAGAGGCTACATTATCAAGTATTGTTGTATCTGACGAAGTTGTGGCTCGTATGGAAAATGAGTGTTGTGTATGTCAAGATGCAATATGCTCAACGATATTCCTTCCATGTGGTCATGTCTGTTGTTGCAAGAAATGTTCTGAAAGTGTTCTTGATTGTCCACTGTGTCGTTCCAACATACACAATCGAATTCAATTACATTTTTGATTATGGTAAAACTAGGTAAAGTAATTTTTCTGCTATCAATCAGTTTTTGCTGCCATTATATATATATATATATATATATATATATATATATATATAGAACGCAGCCGAGTCCAGAAATCTTAACTTCTCTTAACATTTTTCTAACTTTCAATGCTTTGCTAATCACATANACTTACATTACATAACTATGAATAGAATTTTTAACAGTGAATGTACTATT]




>consensus_1790#0
ACGTATAATAAAACATAGATTGGTATTCACGCTCTTGGAGCACGTCGTGAGATTTTGAGG
CAGATTGGTTTGTACAAAATGAAAACAAATGATGAAGACAAGACGTTAAATACGATAGAA
TCACTTCCGATACCGTATGTAACACCATCAGCTCCAGAGGCTACATTATCAAGTATTGTT
GTATCTGACGAAGTTGTGGCTCGTATGGAAAATGAGTGTTGTGTATGTCAAGATGCAATA
TGCTCAACGATATTCCTTCCATGTGGTCATGTCTGTTGTTGCAAGAAATGTTCTGAAAGT
GTTCTTGATTGTCCACTGTGTCGTTCCAACATACACAATCGAATTCAATTACATTTTTGA
TTATGGTAAAACTAGGTAAAGTAATTTTTCTGCTATCAATCAGTTTTTGCTGCCATTATA
TATATATATATATATATATATATATATATATATATAGAACGCAGCCGAGTCCAGAAATCT
TAACTTCTCTTAACATTTTTCTAACTTTCAATGCTTTGCTAATCACATANACTTACATTA
CATAACTATGAATAGAATTTTTAACAGTGAATGTACTATT

consensusID : consensus_1790#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [GGACTTTCGNTTAGTNCANTATCAACGTGTATTGAATTCANAACCTGTCGAATTACTTGATAAGNCAGACTCAGACGTTCANATAATACTTAGTAATGNACAATCTTTGGAATTTNNGCCTAATTTTCANCGACATGCTATTACCTATTCAATTATGCAAACTATGACCGATAGTGATCTGAAAGAAATTGGTATTCACGCTCTNGGAGCACGTCGNGAGATTTGGAGGCAGANTGGTTTGNACANNATGAAAACANNTGATGAAGACAAGANGTCAANTACGATAGANTCACTTCCGATACCGCATGTAAACACCATCAGCTCCAGAGGCTACATTATCAAGTATGGTGG]

[+] EMBL SM947                [GGACTTTCGNTTAGTNCANTATCAACGTGTATTGAATTCANAACCTGTCGAATTACTTGATAAGNCAGACTCAGACGTTCANATAATACTTAGTAATGNACAATCTTTGGAATTTNNGCCTAATTTTCANCGACATGCTATTACCTATTCAATTATGCAAACTATGACCGATAGTGATCTGAAAGAAATTGGTATTCACGCTCTNGGAGCACGTCGNGAGATTTGGAGGCAGANTGGTTTGNACANNATGAAAACANNTGATGAAGACAAGANGTCAANTACGATAGANTCACTTCCGATACCGCATGTAAACACCATCAGCTCCAGAGGCTACATTATCAAGTATGGTGG]




>consensus_1790#1
GGACTTTCGNTTAGTNCANTATCAACGTGTATTGAATTCANAACCTGTCGAATTACTTGA
TAAGNCAGACTCAGACGTTCANATAATACTTAGTAATGNACAATCTTTGGAATTTNNGCC
TAATTTTCANCGACATGCTATTACCTATTCAATTATGCAAACTATGACCGATAGTGATCT
GAAAGAAATTGGTATTCACGCTCTNGGAGCACGTCGNGAGATTTGGAGGCAGANTGGTTT
GNACANNATGAAAACANNTGATGAAGACAAGANGTCAANTACGATAGANTCACTTCCGAT
ACCGCATGTAAACACCATCAGCTCCAGAGGCTACATTATCAAGTATGGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1790#0      ACGTATAATAAAACATAGATTGGTATTCACGCTCTTGGAGCACGTCGTGAGATTTTGAGG 60
consensus_1790#1      ------------------------------------------------------------
                                                                                  

consensus_1790#0      CAGATTGGTTTGTACAAAATGAAAACAAATGATGAAGACAAGACGTTAAATACGATAGAA 120
consensus_1790#1      ------------------------------------------------------------
                                                                                  

consensus_1790#0      TCACTTCCGATACCGTATGTAACACCATCAGCTCCAGAGGCTACATTATCAAGTATTGTT 180
consensus_1790#1      ------------------------------------------------------------
                                                                                  

consensus_1790#0      GTATCTGACGAAGTTGTGGCTCGTATGGAAAATGAGTGTTGTGTATGTCAAGATGCAATA 240
consensus_1790#1      --------------GGACTTTCGNTTAGTNCANTATCAACGTGTAT-TGAATTCANAACC 45
                                     *    ***  * *   *  *     ****** * **     **  

consensus_1790#0      TGCTCAACGATATTCCTTCCATGTGGTCATGTCTGTTGTTGCAAGAAATGTTCTGAAAGT 300
consensus_1790#1      TGTCGAA------TTACTTGATAAGNCAGACTCAGACGTT-CANATAATACTT----AGT 94
                      **   **      *   *  **  *      ** *  *** **   ***  *     ***

consensus_1790#0      GTTCTTGATTGTCCACTGTGTCGTTCCAACATACACAATCGAATTCAATTACATTTTTGA 360
consensus_1790#1      AATGNACAATCTTTGGAATTTNNGCCTAATTTTCANCGAC--ATGCTATTACCTATTCAA 152
                        *    * * *      * *    * **  * **    *  ** * ***** * **  *

consensus_1790#0      TTATGGTAAAACTAGGTAAAGTAATTTTTCTGCTATCAATCAGTTTTTGCTGCCATTATA 420
consensus_1790#1      TTATGC--AAACTATGACCGATAGTGAT-CTGAAAGAAATTGGTATTCACGCTCTNGGAG 209
                      *****   ****** *     ** *  * ***  *  ***  ** **  *   *      

consensus_1790#0      TATATATATATATATATATATATATATATATATATAGAACGCAGCCGAGTCCAGAAATCT 480
consensus_1790#1      CACGTCGNGAGATTTGGAGGCAGANTGGTTTGNACANNATGAAAACANNTGATGAAGACA 269
                       *  *    * ** *  *   * *    * *  * *  * * *  *   *   ***  * 

consensus_1790#0      TAACTTCTCTTAACATTTTTCTAACTTTCAATGCTT--TGCTAATCACATANACTT---A 535
consensus_1790#1      AGANGTCAANTA-CGATAGANTCACTTCCGATACCGCATGTAAACACCATCAGCTCCAGA 328
                        *  **   ** *  *    * **** * ** *    **  **   ***   **    *

consensus_1790#0      CATTACATAACTATGAATAGAATTTTTAACAGTGAATGTACTATT 580
consensus_1790#1      GGCTACATTATCAAGTATGGTGG---------------------- 351
                         ***** *  * * ** *