These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_18#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [TAATGCTGAAGAAGTGTATATTGACATTCCAACAAAGCCGCCAGCAAATCCGAGCCAACCTGCCTGTTTTACACCACAAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAAAATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATTGTACTAGACTTTGAGTATGCATCCTGTTCCATGAGAGAGAAGCGTCTCACAGTAGTACCGAATAAAGAAAAACCAATAAGAACTAATGGCAGCGATGAGCAGGCAACCAAACTAAGCTTCCAACCATACGCGAATGCGATAAAGAAGCCAATAAAGAAACTAGAGATATTCTGAATAAATTCGCTTAACTTCTCCCCAATACCAAGATGTATGCTAGTTGTGTGTTCAGTTAATTTATCTATCAGGCTTCCGACGGAGTGCTCATCCAGCCAAGCTACGTCTTGATTCAATACTGCTTGGATTAGAAGTCGTCTGATACGTTTTACAACGCGTGAAGCACAGATGTTTGTGAACCACACTTGACCAAAGGATATCAGAAAAGCACAAGCAGNCATAAACTGCATCCAAACAGATGCACGATA] [+] EMBL CD136833 [TAATGCTGAAGAAGTGTATATTGACATTCCAACAAAGCCGCCAGCAAATCCGAGCCAACCTGCCTGTTTTACACCACAAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAAAATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATTGTACTAGACTTTGAGTATGCATCCTGTTCCATGAGAGAGAAGCGTCTCACAGTAGTACCGAATAAAGAAAAACCAATAAGAACTAATGGCAGCGATGAGCAGGCAACCAAACTAAGCTTCCAACCATACGCGAATGCGATAAAGAAGCCAATAAAGAAACTAGAGATATTCTGAATAAATTCGCTTAACTTCTCCCCAATACCAAGATGTATGCTAGTTGTGTGTTCAGTTAATTTATCTATCAGGCTTCCGACGGAGTGCTCATCCAGCCAAGCTACGTCTTGATTCAATACTGCTTGGATTAGAAGTCGTCTGATACGTTTTACAACGCGTGAAGCACAGATGTTTGTGAACCACACTTGACCAAAGGATATCAGAAAAGCACAAGCAGNCATAAACTGCATCCAAACAGATGCACGATA] consensusID : consensus_18#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [CTACATNTGATTCTCTTAATCCAGATATTCAGACATAGGTATGAGTTATTTCAAAATATCTATACCAATAACCACTTTATCTTATATAACGAAACAGATTGTATAATCAGATGTATTCTGAAGTAATATGGGAAAAACCGGTCTTACCAAATCCAAGCCAACCTGCCTGTTTTACACCACAAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAAAATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATCGTACTAGACTTTGAGTATGCATCCTGTTCC] [-] EMBL CD177694 [CTACATNTGATTCTCTTAATCCAGATATTCAGACATAGGTATGAGTTATTTCAAAATATCTATACCAATAACCACTTTATCTTATATAACGAAACAGATTGTATAATCAGATGTATTCTGAAGTAATATGGGAAAAACCGGTCTTACCAAATCCAAGCCAACCTGCCTGTTTTACACCACAAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAAAATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATCGTACTAGACTTTGAGTATGCATCCTGTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_18#0 ------------------------------------------------------------ consensus_18#1 CTACATNTGATTCTCTTAATCCAGATATTCAGACATAGGTATGAGTTATTTCAAAATATC 60 consensus_18#0 ------------------------------------TAATGC-TGAAGAAGTGTATATTG 23 consensus_18#1 TATACCAATAACCACTTTATCTTATATAACGAAACAGATTGTATAATCAGATGTATTCTG 120 * ** * * * ***** ** consensus_18#0 ACATTCCA---ACAAAGCCG---CCAGCAAATCCGAGCCAACCTGCCTGTTTTACACCAC 77 consensus_18#1 AAGTAATATGGGAAAAACCGGTCTTACCAAATCCAAGCCAACCTGCCTGTTTTACACCAC 180 * * * *** *** * ******* ************************* consensus_18#0 AAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAA 137 consensus_18#1 AAGCGGCAGCCATATTCAGATTATTGCTATAACGTAATACTTCTTTCCTCTCCCCGGAAA 240 ************************************************************ consensus_18#0 AATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATTGTACTAGACTTTGAGT 197 consensus_18#1 AATTAATTACTGTTCGGATAGCGCTCAAAACTTCCTCAGTAATCGTACTAGACTTTGAGT 300 ******************************************* **************** consensus_18#0 ATGCATCCTGTTCCATGAGAGAGAAGCGTCTCACAGTAGTACCGAATAAAGAAAAACCAA 257 consensus_18#1 ATGCATCCTGTTCC---------------------------------------------- 314 ************** consensus_18#0 TAAGAACTAATGGCAGCGATGAGCAGGCAACCAAACTAAGCTTCCAACCATACGCGAATG 317 consensus_18#1 ------------------------------------------------------------ consensus_18#0 CGATAAAGAAGCCAATAAAGAAACTAGAGATATTCTGAATAAATTCGCTTAACTTCTCCC 377 consensus_18#1 ------------------------------------------------------------ consensus_18#0 CAATACCAAGATGTATGCTAGTTGTGTGTTCAGTTAATTTATCTATCAGGCTTCCGACGG 437 consensus_18#1 ------------------------------------------------------------ consensus_18#0 AGTGCTCATCCAGCCAAGCTACGTCTTGATTCAATACTGCTTGGATTAGAAGTCGTCTGA 497 consensus_18#1 ------------------------------------------------------------ consensus_18#0 TACGTTTTACAACGCGTGAAGCACAGATGTTTGTGAACCACACTTGACCAAAGGATATCA 557 consensus_18#1 ------------------------------------------------------------ consensus_18#0 GAAAAGCACAAGCAGNCATAAACTGCATCCAAACAGATGCACGATA 603 consensus_18#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||