cluster # 1824

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Schistosoma mansoni
cluster # 1824 cluster # 1824 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1824#0 length = 545 sequences # 1

consensus_1824#1 length = 220 sequences # 1

consensusID : consensus_1824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCGCCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAATATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTAAGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGACATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGTCGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAATACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCGATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTGAATTA]

[+] EMBL CD079137             [ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCGCCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAATATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTAAGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGACATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGTCGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAATACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCGATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTGAATTA]




>consensus_1824#0
ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCG
CCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAAT
ATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTA
AGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAA
GAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGAC
ATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGT
CGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAA
TACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCG
ATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTG
AATTA

consensusID : consensus_1824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGACATTGTCCAGCTAATCATACATATGATTCTAGTCACTTTGTTAAAGAAAGGTCGAATAGATCCTACTTACAGGATGTTACATTAAAGAGACAATAAATTCGTCAGATCGGCTTA]

[+] EMBL SMAA69178            [AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGACATTGTCCAGCTAATCATACATATGATTCTAGTCACTTTGTTAAAGAAAGGTCGAATAGATCCTACTTACAGGATGTTACATTAAAGAGACAATAAATTCGTCAGATCGGCTTA]




>consensus_1824#1
AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAA
ATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGACATTGTCCAGCTAA
TCATACATATGATTCTAGTCACTTTGTTAAAGAAAGGTCGAATAGATCCTACTTACAGGA
TGTTACATTAAAGAGACAATAAATTCGTCAGATCGGCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1824#0      ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCG 60
consensus_1824#1      ------------------------------------------------------------
                                                                                  

consensus_1824#0      CCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAAT 120
consensus_1824#1      ------------------------------------------------------------
                                                                                  

consensus_1824#0      ATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTA 180
consensus_1824#1      ------------------------------------------------------------
                                                                                  

consensus_1824#0      AGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAA 240
consensus_1824#1      -------------AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAA 47
                                   ***********************************************

consensus_1824#0      GAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGAC 300
consensus_1824#1      GAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGAC 107
                      ******************************************  ****************

consensus_1824#0      ATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGT 360
consensus_1824#1      ATTGTCCAGCTAATCA--TACA-TAT-GATTCTA-GTCAC--TTTGTTAAAG--AAAGGT 158
                      ****************   *** *** ******* ****   *********   ******

consensus_1824#0      CGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAA 420
consensus_1824#1      CGAA-TAGATCCTACTTACAGGATGTTACATTAAA-GAGACAA--TAAATTCGTCAGAT- 213
                      **** ******************** ********* *******   **********    

consensus_1824#0      TACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCG 480
consensus_1824#1      --CGGCTTA--------------------------------------------------- 220
                        *** ***                                                   

consensus_1824#0      ATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTG 540
consensus_1824#1      ------------------------------------------------------------
                                                                                  

consensus_1824#0      AATTA 545
consensus_1824#1      -----