These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1826#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CCCCCATATAATGTTCGTGTTGAATAATGGGAGTTCACTTCCCCCATTGAATCTTATAACTATGGCTACTGTAATCGAAGCAAATGGGCCAGTTTACAATGGACCTGGAGCCAGCAAACCTAGCTCCCCATTTGTACTCTGTAATCTTGAGTTATCTCAGCGCGCTGCTGTAGAAAAGGCCAAAAAGTATGCAATGGAACAAAGTATACGTTCGGTGCTTTTACGTCAAACTCAGTCACAGCAGTCCCTTCAACTGAATAATATAAAAAAGAACCAAACTGTTGCACTCCTGAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGTGTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAAACATAAAGGGTTCGCATTTCTTGAATTTGAATATCCCGAAGCTGCACAATTAGCTATTGACCAGATGAACGGTACTAGCTTTGGTGGGAGGCAGTTAAAAGTTGGTAGACCAAGTAACCTAACAAACGCCGAACCTGTCATAAATGAGCTAGTTAATGAACACAATCTTCATAACCGCATTTACGTTGCTGGTATACACTTAGATCTCACTGAAGATGATGTTTCTTTAGTATTTGAAGCTTTTGGGAAAATAGTGTTTTGCAAGCTTCAACCTGATCCAACT] [+] EMBL BF936422 [CCCCCATATAATGTTCGTGTTGAATAATGGGAGTTCACTTCCCCCATTGAATCTTATAACTATGGCTACTGTAATCGAAGCAAATGGGCCAGTTTACAATGGACCTGGAGCCAGCAAACCTAGCTCCCCATTTGTACTCTGTAATCTTGAGTTATCTCAGCGCGCTGCTGTAGAAAAGGCCAAAAAGTATGCAATGGAACAAAGTATACGTTCGGTGCTTTTACGTCAAACTCAGTCACAGCAGTCCCTTCAACTGAATAATATAAAAAAGAACCAAACTGTTGCACTCCTGAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGTGTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAAACATAAAGGGTTCGCATTTCTTGAATTTGAATATCCCGAAGCTGCACAATTAGCTATTGACCAGATGAACGGTACTAGCTTTGGTGGGAGGCAGTTAAAAGTTGGTAGACCAAGTAACCTAACAAACGCCGAACCTGTCATAAATGAGCTAGTTAATGAACACAATCTTCATAACCGCATTTACGTTGCTGGTATACACTTAGATCTCACTGAAGATGATGTTTCTTTAGTATTTGAAGCTTTTGGGAAAATAGTGTTTTGCAAGCTTCAACCTGATCCAACT] consensusID : consensus_1826#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [CGNGCCTACCACTTAGTTATATAGGAAATAATAAATCAACTCCGATTTGTTTTCTACAGTTTAAAGGGAATATGAAGTTATTGGTAAAAGTCACTTAATTTTCTGCCTGATCTGCAGCCGATATTCAGTTCTTTTAAAATCTGAAGTCCTACATTTTATTTTCATAATAATGTTTCTATTCATATGATCCCGTGATGCATTTGCAACTCTCGGGAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGTGTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAAACATAAAGGGTTCGCATTTCTTGAATTTGATTCC] [+] EMBL CD062688 [CGNGCCTACCACTTAGTTATATAGGAAATAATAAATCAACTCCGATTTGTTTTCTACAGTTTAAAGGGAATATGAAGTTATTGGTAAAAGTCACTTAATTTTCTGCCTGATCTGCAGCCGATATTCAGTTCTTTTAAAATCTGAAGTCCTACATTTTATTTTCATAATAATGTTTCTATTCATATGATCCCGTGATGCATTTGCAACTCTCGGGAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGTGTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAAACATAAAGGGTTCGCATTTCTTGAATTTGATTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1826#0 CCCCCATATAATGTTCGTGTTGAATAATGGGAGTTCACTTCCCCCATTGAATCTTATAAC 60 consensus_1826#1 ------------------------------------------------------------ consensus_1826#0 TATGGCTACTGTAATCGAAGCAAATGGGCCAGTTTACAATGGACCTGGAGCCAGCAAACC 120 consensus_1826#1 --------------------CGNGCCTACCACTTAGTTATATA---GGAAATAATAAATC 37 * *** ** ** * *** * *** * consensus_1826#0 TAGCTCCCCATTTGTACTCTGTAATCTTGAGTTATCTCAGCGCGCTGCTGTAGAAAAGGC 180 consensus_1826#1 AA--CTCCGATTTGTTTTCTACAGTTTAAAGGGAATATGAAGTTAT-TGGTAAAAGTCAC 94 * ** ****** *** * * * ** * * * *** ** * consensus_1826#0 CAAAAAGTATGCAATGGAACAAAGTATACGTTCGGTGCTTTTACG--TCAAACTCAGTCA 238 consensus_1826#1 TTAATTTTCTGCC-TGATCTGCAGCCGATATTCAGTTCTTTTAAAATCTGAAGTCCTACA 153 ** * *** ** ** * *** ** ****** ** ** ** consensus_1826#0 CAGCAGTCCCTTCAACTGAATAATATAAAAAAGAACC----AAACTGTTGCACTCCT--- 291 consensus_1826#1 TTTTATTTTCATAATAATGTTTCTATTCATATGATCCCGTGATGCATTTGCAACTCTCGG 213 * * * * * * *** * * ** ** * * ***** ** consensus_1826#0 GAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGT 351 consensus_1826#1 GAATCGAGTTTATGTTGGTTCAATAGCATATGATGTAAAAGAAGATAGTCTAAAACAGGT 273 ************************************************************ consensus_1826#0 GTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAA 411 consensus_1826#1 GTTTTCACCGTTTGGTCCTATTAAGTCTGTGAATTTAAGTTGGGATCCTTCTACACAAAA 333 ************************************************************ consensus_1826#0 ACATAAAGGGTTCGCATTTCTTGAATTTGAATATCCCGAAGCTGCACAATTAGCTATTGA 471 consensus_1826#1 ACATAAAGGGTTCGCATTTCTTGAATTTGATTCC-------------------------- 367 ****************************** * consensus_1826#0 CCAGATGAACGGTACTAGCTTTGGTGGGAGGCAGTTAAAAGTTGGTAGACCAAGTAACCT 531 consensus_1826#1 ------------------------------------------------------------ consensus_1826#0 AACAAACGCCGAACCTGTCATAAATGAGCTAGTTAATGAACACAATCTTCATAACCGCAT 591 consensus_1826#1 ------------------------------------------------------------ consensus_1826#0 TTACGTTGCTGGTATACACTTAGATCTCACTGAAGATGATGTTTCTTTAGTATTTGAAGC 651 consensus_1826#1 ------------------------------------------------------------ consensus_1826#0 TTTTGGGAAAATAGTGTTTTGCAAGCTTCAACCTGATCCAACT 694 consensus_1826#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||