cluster # 1858

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Schistosoma mansoni
cluster # 1858 cluster # 1858 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1858#0 length = 410 sequences # 1

consensus_1858#1 length = 180 sequences # 1

consensusID : consensus_1858#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [AACTTTTTTAATAAAGATGATAGAAGTACAAAAAAGGCTTTAAAAGCATTTTTCTCTGTCAAGGTTTTTCTAAAAAAAATTTCCATTTGCATATACATATCCAGTCTTAAATTGAATTGAGGTTAACTATTGAGCTGCATGTAGATTTTTTATGAAACAATTTATTCCAATACTAAGGTACACTTTATTTAATGTTTTCAATAATAGTCACAAAATGCTAGATCTTTGTGTATAAAAAACAAGCCACAGGATAAAAGCGAAAAGTTCACATATATAGAAACGTTTGCATGAAGAAATATTTATGTCAATAAAACGTTTATACAAAGAATATTCAATATTAGTTATTCGTAAAAAGAAATAATAAAGCATGTTTAACGATTTTAGGAATATGCTGAACAAGCAAACATGTC]

[+] EMBL AI977416             [AACTTTTTTAATAAAGATGATAGAAGTACAAAAAAGGCTTTAAAAGCATTTTTCTCTGTCAAGGTTTTTCTAAAAAAAATTTCCATTTGCATATACATATCCAGTCTTAAATTGAATTGAGGTTAACTATTGAGCTGCATGTAGATTTTTTATGAAACAATTTATTCCAATACTAAGGTACACTTTATTTAATGTTTTCAATAATAGTCACAAAATGCTAGATCTTTGTGTATAAAAAACAAGCCACAGGATAAAAGCGAAAAGTTCACATATATAGAAACGTTTGCATGAAGAAATATTTATGTCAATAAAACGTTTATACAAAGAATATTCAATATTAGTTATTCGTAAAAAGAAATAATAAAGCATGTTTAACGATTTTAGGAATATGCTGAACAAGCAAACATGTC]




>consensus_1858#0
AACTTTTTTAATAAAGATGATAGAAGTACAAAAAAGGCTTTAAAAGCATTTTTCTCTGTC
AAGGTTTTTCTAAAAAAAATTTCCATTTGCATATACATATCCAGTCTTAAATTGAATTGA
GGTTAACTATTGAGCTGCATGTAGATTTTTTATGAAACAATTTATTCCAATACTAAGGTA
CACTTTATTTAATGTTTTCAATAATAGTCACAAAATGCTAGATCTTTGTGTATAAAAAAC
AAGCCACAGGATAAAAGCGAAAAGTTCACATATATAGAAACGTTTGCATGAAGAAATATT
TATGTCAATAAAACGTTTATACAAAGAATATTCAATATTAGTTATTCGTAAAAAGAAATA
ATAAAGCATGTTTAACGATTTTAGGAATATGCTGAACAAGCAAACATGTC

consensusID : consensus_1858#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [TTCTGCATGTAAGGAAATATTCATGTAAATAAAATGTTTATACAAAGAATATTTAATATTAGTTTTTCGTAAAAAGAAAGAATAAAGCATGTTTAAGGATTTTAGGAATATGCGGAACAAGCAAACATGTCAACCAGATCAGAAAGTAAATGGCAATTGGGTTTAACTCTAATTTATTAA]

[+] EMBL CD062774             [TTCTGCATGTAAGGAAATATTCATGTAAATAAAATGTTTATACAAAGAATATTTAATATTAGTTTTTCGTAAAAAGAAAGAATAAAGCATGTTTAAGGATTTTAGGAATATGCGGAACAAGCAAACATGTCAACCAGATCAGAAAGTAAATGGCAATTGGGTTTAACTCTAATTTATTAA]




>consensus_1858#1
TTCTGCATGTAAGGAAATATTCATGTAAATAAAATGTTTATACAAAGAATATTTAATATT
AGTTTTTCGTAAAAAGAAAGAATAAAGCATGTTTAAGGATTTTAGGAATATGCGGAACAA
GCAAACATGTCAACCAGATCAGAAAGTAAATGGCAATTGGGTTTAACTCTAATTTATTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1858#0      AACTTTTTTAATAAAGATGATAGAAGTACAAAAAAGGCTTTAAAAGCATTTTTCTCTGTC 60
consensus_1858#1      ------------------------------------------------------------
                                                                                  

consensus_1858#0      AAGGTTTTTCTAAAAAAAATTTCCATTTGCATATACATATCCAGTCTTAAATTGAATTGA 120
consensus_1858#1      ------------------------------------------------------------
                                                                                  

consensus_1858#0      GGTTAACTATTGAGCTGCATGTAGATTTTTTATGAAACAATTTATTCCAATACTAAGGTA 180
consensus_1858#1      ------------------------------------------------------------
                                                                                  

consensus_1858#0      CACTTTATTTAATGTTTTCAATAATAGTCACAAAATGCTAGATCTTTGTGTATAAAAAAC 240
consensus_1858#1      ------------------------------------------------------------
                                                                                  

consensus_1858#0      AAGCCACAGGATAAAAGCGAAAAGTTCACATATATAGAAACGTTTGCATG--AAGAAATA 298
consensus_1858#1      -----------------------------------------TTCTGCATGTAAGGAAATA 19
                                                                * ******  * ******

consensus_1858#0      TTTATGTCAATAAAACGTTTATACAAAGAATATTCAATATTAGTTATTCGTAAAAAGAAA 358
consensus_1858#1      TTCATGTAAATAAAATGTTTATACAAAGAATATTTAATATTAGTTTTTCGTAAAAAGAAA 79
                      ** **** ******* ****************** ********** **************

consensus_1858#0      TAATAAAGCATGTTTAACGATTTTAGGAATATGCTGAACAAGCAAACATGTC-------- 410
consensus_1858#1      GAATAAAGCATGTTTAAGGATTTTAGGAATATGCGGAACAAGCAAACATGTCAACCAGAT 139
                       **************** **************** *****************        

consensus_1858#0      -----------------------------------------
consensus_1858#1      CAGAAAGTAAATGGCAATTGGGTTTAACTCTAATTTATTAA 180