These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [TATGTATATATTAGAAAAAAAAACAATAATGTAGTATAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAACCACAAAAAAAAACAAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAAACACAAGATGGACTTGTATCAATAAACTATTAGTGTGATATATAAATAATAAGTTAGAATGATAATAGTAGTTAGTTTTATTGATTTATAATAGAATAATAATATATTATATGGCAAAATAATCACACTAAAGTTATATATTCTCATCCAATGCACAGTCATACATTTTTCGATAGAAATAACAACTTTTCCTCCTCGGAAATACACAAGTCCTATCATCAGTACCATTTTGAAATATTTAATTAACTGAGGATTGACTTCTTTTTTGCCTATTTCTAACAAAAAAAAGGAGGAAATTTTGTCCGATATAGGACTCAACAAAAAACAATCAACAAAAAAAACAGGAATTGTTTCACTAACAAAGAATTCAAGTGTTTCGTTTCACCTGCAACCATCCTAGACACCAACACT] [+] EMBL CD074369 [TATGTATATATTAGAAAAAAAAACAATAATGTAGTATAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAACCACAAAAAAAAACAAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAAACACAAGATGGACTTGTATCAATAAACTATTAGTGTGATATATAAATAATAAGTTAGAATGATAATAGTAGTTAGTTTTATTGATTTATAATAGAATAATAATATATTATATGGCAAAATAATCACACTAAAGTTATATATTCTCATCCAATGCACAGTCATACATTTTTCGATAGAAATAACAACTTTTCCTCCTCGGAAATACACAAGTCCTATCATCAGTACCATTTTGAAATATTTAATTAACTGAGGATTGACTTCTTTTTTGCCTATTTCTAACAAAAAAAAGGAGGAAATTTTGTCCGATATAGGACTCAACAAAAAACAATCAACAAAAAAAACAGGAATTGTTTCACTAACAAAGAATTCAAGTGTTTCGTTTCACCTGCAACCATCCTAGACACCAACACT] consensusID : consensus_187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [TTTTTTTTTTTTTTTTTTAACGTATATGTATATATTAGAAAAAAAAACAATAATGTAGTATAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAACCACAAAAAAAAACCAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAAACACAAGATGGACTTGTATCAATAAACTATTAGTGTGGATATATAAATAATAAGTTAGATGGTAAAAGGAGGTAGTTTATTGATTTAAATGGAATATAATTTTTTTATGGGAAAATATCCACCCAAGGTTTATATCTCCCCCCATGGCAG] [+] EMBL AI438713 [TTTTTTTTTTTTTTTTTTAACGTATATGTATATATTAGAAAAAAAAACAATAATGTAGTATAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAACCACAAAAAAAAACCAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAAACACAAGATGGACTTGTATCAATAAACTATTAGTGTGGATATATAAATAATAAGTTAGATGGTAAAAGGAGGTAGTTTATTGATTTAAATGGAATATAATTTTTTTATGGGAAAATATCCACCCAAGGTTTATATCTCCCCCCATGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_187#0 ------------------------TATGTATATATTAGAAAAAAAAACAATAATGTAGTA 36 consensus_187#1 TTTTTTTTTTTTTTTTTTAACGTATATGTATATATTAGAAAAAAAAACAATAATGTAGTA 60 ************************************ consensus_187#0 TAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAAC 96 consensus_187#1 TAGTATATATAATTCAAGTTATTTTGAATAAAATAATAACCAAAACAAAGTATTTAGAAC 120 ************************************************************ consensus_187#0 CACAAAAAAAAACAAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAA 156 consensus_187#1 CACAAAAAAAAACCAGAATTAAATGGATAGTCAGATAAGTATATATATAGTCCTTTCAAA 180 ************* ********************************************** consensus_187#0 ACACAAGATGGACTTGTATCAATAAACTATTAGTGTG-ATATATAAATAATAAGTTAGAA 215 consensus_187#1 ACACAAGATGGACTTGTATCAATAAACTATTAGTGTGGATATATAAATAATAAGTTAGA- 239 ************************************* ********************* consensus_187#0 TGATAATAGTAGTTAGTTTTATTGATTTATAATAGAATAATAATATATTATATGGCAAAA 275 consensus_187#1 TGGTAAAAGGAGGTAGTTT-ATTGATTTA-AATGGAATA-TAAT-TTTTTTATGGGAAAA 295 ** *** ** ** ****** ********* *** ***** **** * ** ***** **** consensus_187#0 TAATCACACTAAAGTTATATATTCTCATCCAATGCACAGTCATACATTTTTCGATAGAAA 335 consensus_187#1 TATCCAC-CCAAGGTT-TATATCTCCCCCCATGGCAG----------------------- 330 ** *** * ** *** ***** * *** *** consensus_187#0 TAACAACTTTTCCTCCTCGGAAATACACAAGTCCTATCATCAGTACCATTTTGAAATATT 395 consensus_187#1 ------------------------------------------------------------ consensus_187#0 TAATTAACTGAGGATTGACTTCTTTTTTGCCTATTTCTAACAAAAAAAAGGAGGAAATTT 455 consensus_187#1 ------------------------------------------------------------ consensus_187#0 TGTCCGATATAGGACTCAACAAAAAACAATCAACAAAAAAAACAGGAATTGTTTCACTAA 515 consensus_187#1 ------------------------------------------------------------ consensus_187#0 CAAAGAATTCAAGTGTTTCGTTTCACCTGCAACCATCCTAGACACCAACACT 567 consensus_187#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||