These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_189#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [GTATCTATCCTTTGTTGTCCAGCTTGTGTCCAATGGGTTTCGCTGATTCCGAGTACTGCCAATTTGCATCTCCTCATTTCCATTGCTATTTGACTGGTCTACCAAATTGTCCGAACGTTCCATGTACCTATAGAGTGTTGCTCTGGTTGTTAGAAAGGACATATAACTTGTGACTTCCGAAAAATGTCGGCTTTCATCATGAGGCTTCATAATTATTCCTTCAACTCCCAACGCAGAGTTTAAATGGTTAGCGTTTGACTTGTGGCGGACCAAAAAGCATGTTAACCAAAATAGCAATGAAAGAATATTACGTCCAAAGTTTATGCAATAATAAACAGTTTATAAGTTATTAACACACACATAAAAGTCAGGGACGTTACTTAAATTGACTGGCGGTTGCG] [+] EMBL CD088058 [GTATCTATCCTTTGTTGTCCAGCTTGTGTCCAATGGGTTTCGCTGATTCCGAGTACTGCCAATTTGCATCTCCTCATTTCCATTGCTATTTGACTGGTCTACCAAATTGTCCGAACGTTCCATGTACCTATAGAGTGTTGCTCTGGTTGTTAGAAAGGACATATAACTTGTGACTTCCGAAAAATGTCGGCTTTCATCATGAGGCTTCATAATTATTCCTTCAACTCCCAACGCAGAGTTTAAATGGTTAGCGTTTGACTTGTGGCGGACCAAAAAGCATGTTAACCAAAATAGCAATGAAAGAATATTACGTCCAAAGTTTATGCAATAATAAACAGTTTATAAGTTATTAACACACACATAAAAGTCAGGGACGTTACTTAAATTGACTGGCGGTTGCG] consensusID : consensus_189#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [TAATTGGTATACATTGGAAATATTAGATATATTTGAATGTCGAAAATCTACGGAACAAGAAGAATTCAAAGATTACGGGAATAGGATGCTTCTTTGGCATGGAAGTCGTTTAACCAATTGGGTTGGCATTTTAGGCAGAGGTTTACAAATTGCTCCACCTGAAGCTCCATCTACTGGATATATGTTTGGAAAAGGTGTATAGAACATTTTCCCCTTTGTGACCGGAGTACAGCAGCATCTTTCCCGTACCTAGCCTTTGTTGTCCAGCTTGTGTCCAAAGAGTTTCGCTGATTCCGAGCACTGGCAATTTGTATCTCCTCATTTCCATGTGGGGT] [+] EMBL CD129952 [TAATTGGTATACATTGGAAATATTAGATATATTTGAATGTCGAAAATCTACGGAACAAGAAGAATTCAAAGATTACGGGAATAGGATGCTTCTTTGGCATGGAAGTCGTTTAACCAATTGGGTTGGCATTTTAGGCAGAGGTTTACAAATTGCTCCACCTGAAGCTCCATCTACTGGATATATGTTTGGAAAAGGTGTATAGAACATTTTCCCCTTTGTGACCGGAGTACAGCAGCATCTTTCCCGTACCTAGCCTTTGTTGTCCAGCTTGTGTCCAAAGAGTTTCGCTGATTCCGAGCACTGGCAATTTGTATCTCCTCATTTCCATGTGGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_189#0 GTATCTATCCTTTGTTGTCCAGCTTGTGTCCAATGGGTTTCGCTGATTCCGAGTACTGCC 60 consensus_189#1 -------------------TAATTGGTATACATTGGAAAT-----ATTAGATATATTTGA 36 * * ** * ** *** * *** ** * consensus_189#0 AATTTGCATCTCCTCATTTCCATTGCTATTTGACTGGTCTACCAAATTGTCCGAACGTTC 120 consensus_189#1 ATGTCGAAAATCTACGGAACAAGAAGAATTCAA--AGATTACGGGAATA---GGATGCTT 91 * * * * ** * * * *** * * *** * * * * * * consensus_189#0 CATGTACCTATAGAGTGTTGCTCTGGTTGTTAGAAAGGACATATAACTTGTGACTTCCGA 180 consensus_189#1 CTTTGGC--ATGGAA-GTCGTTTAACCAATTGGGTTGGCATTTTAGGCAGAGGTTTAC-- 146 * * * ** ** ** * * ** * ** * ** * * ** * consensus_189#0 AAAATGTCGGCTTTCATCATGAGGCTTCATAATTATTCCTTCAACTCCCAACGCAGAGTT 240 consensus_189#1 AAATTGC-----TCCACC-TGAAGCTCCAT--CTACTGGATATATGTTTG--GAAAAGGT 196 *** ** * ** * *** *** *** ** * * * * * ** * consensus_189#0 TAAATGGTTAGCGTTTGACTTGTGGC-GGACCAAAA-AGCATGTTAACCAAAA-TAGCAA 297 consensus_189#1 GTATAGAACATTTTCCCCTTTGTGACCGGAGTACAGCAGCATCTTTCCCGTACCTAGCCT 256 * * * * ***** * *** * * ***** ** ** * **** consensus_189#0 TGAAAGAATA--TTACGTCCAAAG--TTTATGCAATAATAAACAGTTTATAAGTTATTAA 353 consensus_189#1 TTGTTGTCCAGCTTGTGTCCAAAGAGTTTCGCTGATTCCGAGCA-CTGGCAATTTGTATC 315 * * * ** ******** *** ** * ** * ** ** * consensus_189#0 CACACACATAAAAGTCAGGGACGTTACTTAAATTGACTGGCGGTTGCG 401 consensus_189#1 TCCTCATTTCCATGTGGGGT---------------------------- 335 * ** * * ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||