cluster # 189

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Schistosoma mansoni
cluster # 189 cluster # 189 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_189#0 length = 401 sequences # 1

consensus_189#1 length = 335 sequences # 1

consensusID : consensus_189#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [GTATCTATCCTTTGTTGTCCAGCTTGTGTCCAATGGGTTTCGCTGATTCCGAGTACTGCCAATTTGCATCTCCTCATTTCCATTGCTATTTGACTGGTCTACCAAATTGTCCGAACGTTCCATGTACCTATAGAGTGTTGCTCTGGTTGTTAGAAAGGACATATAACTTGTGACTTCCGAAAAATGTCGGCTTTCATCATGAGGCTTCATAATTATTCCTTCAACTCCCAACGCAGAGTTTAAATGGTTAGCGTTTGACTTGTGGCGGACCAAAAAGCATGTTAACCAAAATAGCAATGAAAGAATATTACGTCCAAAGTTTATGCAATAATAAACAGTTTATAAGTTATTAACACACACATAAAAGTCAGGGACGTTACTTAAATTGACTGGCGGTTGCG]

[+] EMBL CD088058             [GTATCTATCCTTTGTTGTCCAGCTTGTGTCCAATGGGTTTCGCTGATTCCGAGTACTGCCAATTTGCATCTCCTCATTTCCATTGCTATTTGACTGGTCTACCAAATTGTCCGAACGTTCCATGTACCTATAGAGTGTTGCTCTGGTTGTTAGAAAGGACATATAACTTGTGACTTCCGAAAAATGTCGGCTTTCATCATGAGGCTTCATAATTATTCCTTCAACTCCCAACGCAGAGTTTAAATGGTTAGCGTTTGACTTGTGGCGGACCAAAAAGCATGTTAACCAAAATAGCAATGAAAGAATATTACGTCCAAAGTTTATGCAATAATAAACAGTTTATAAGTTATTAACACACACATAAAAGTCAGGGACGTTACTTAAATTGACTGGCGGTTGCG]




>consensus_189#0
GTATCTATCCTTTGTTGTCCAGCTTGTGTCCAATGGGTTTCGCTGATTCCGAGTACTGCC
AATTTGCATCTCCTCATTTCCATTGCTATTTGACTGGTCTACCAAATTGTCCGAACGTTC
CATGTACCTATAGAGTGTTGCTCTGGTTGTTAGAAAGGACATATAACTTGTGACTTCCGA
AAAATGTCGGCTTTCATCATGAGGCTTCATAATTATTCCTTCAACTCCCAACGCAGAGTT
TAAATGGTTAGCGTTTGACTTGTGGCGGACCAAAAAGCATGTTAACCAAAATAGCAATGA
AAGAATATTACGTCCAAAGTTTATGCAATAATAAACAGTTTATAAGTTATTAACACACAC
ATAAAAGTCAGGGACGTTACTTAAATTGACTGGCGGTTGCG

consensusID : consensus_189#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [TAATTGGTATACATTGGAAATATTAGATATATTTGAATGTCGAAAATCTACGGAACAAGAAGAATTCAAAGATTACGGGAATAGGATGCTTCTTTGGCATGGAAGTCGTTTAACCAATTGGGTTGGCATTTTAGGCAGAGGTTTACAAATTGCTCCACCTGAAGCTCCATCTACTGGATATATGTTTGGAAAAGGTGTATAGAACATTTTCCCCTTTGTGACCGGAGTACAGCAGCATCTTTCCCGTACCTAGCCTTTGTTGTCCAGCTTGTGTCCAAAGAGTTTCGCTGATTCCGAGCACTGGCAATTTGTATCTCCTCATTTCCATGTGGGGT]

[+] EMBL CD129952             [TAATTGGTATACATTGGAAATATTAGATATATTTGAATGTCGAAAATCTACGGAACAAGAAGAATTCAAAGATTACGGGAATAGGATGCTTCTTTGGCATGGAAGTCGTTTAACCAATTGGGTTGGCATTTTAGGCAGAGGTTTACAAATTGCTCCACCTGAAGCTCCATCTACTGGATATATGTTTGGAAAAGGTGTATAGAACATTTTCCCCTTTGTGACCGGAGTACAGCAGCATCTTTCCCGTACCTAGCCTTTGTTGTCCAGCTTGTGTCCAAAGAGTTTCGCTGATTCCGAGCACTGGCAATTTGTATCTCCTCATTTCCATGTGGGGT]




>consensus_189#1
TAATTGGTATACATTGGAAATATTAGATATATTTGAATGTCGAAAATCTACGGAACAAGA
AGAATTCAAAGATTACGGGAATAGGATGCTTCTTTGGCATGGAAGTCGTTTAACCAATTG
GGTTGGCATTTTAGGCAGAGGTTTACAAATTGCTCCACCTGAAGCTCCATCTACTGGATA
TATGTTTGGAAAAGGTGTATAGAACATTTTCCCCTTTGTGACCGGAGTACAGCAGCATCT
TTCCCGTACCTAGCCTTTGTTGTCCAGCTTGTGTCCAAAGAGTTTCGCTGATTCCGAGCA
CTGGCAATTTGTATCTCCTCATTTCCATGTGGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_189#0      GTATCTATCCTTTGTTGTCCAGCTTGTGTCCAATGGGTTTCGCTGATTCCGAGTACTGCC 60
consensus_189#1      -------------------TAATTGGTATACATTGGAAAT-----ATTAGATATATTTGA 36
                                         *  * ** * ** ***   *     ***     ** *   

consensus_189#0      AATTTGCATCTCCTCATTTCCATTGCTATTTGACTGGTCTACCAAATTGTCCGAACGTTC 120
consensus_189#1      ATGTCGAAAATCTACGGAACAAGAAGAATTCAA--AGATTACGGGAATA---GGATGCTT 91
                     *  * * *  **  *    * *     ***  *   *  ***   * *    * * * * 

consensus_189#0      CATGTACCTATAGAGTGTTGCTCTGGTTGTTAGAAAGGACATATAACTTGTGACTTCCGA 180
consensus_189#1      CTTTGGC--ATGGAA-GTCGTTTAACCAATTGGGTTGGCATTTTAGGCAGAGGTTTAC-- 146
                     * *   *  ** **  ** * *       ** *   **   * **    * *  ** *  

consensus_189#0      AAAATGTCGGCTTTCATCATGAGGCTTCATAATTATTCCTTCAACTCCCAACGCAGAGTT 240
consensus_189#1      AAATTGC-----TCCACC-TGAAGCTCCAT--CTACTGGATATATGTTTG--GAAAAGGT 196
                     *** **      * ** * *** *** ***   ** *   *  *        * * ** *

consensus_189#0      TAAATGGTTAGCGTTTGACTTGTGGC-GGACCAAAA-AGCATGTTAACCAAAA-TAGCAA 297
consensus_189#1      GTATAGAACATTTTCCCCTTTGTGACCGGAGTACAGCAGCATCTTTCCCGTACCTAGCCT 256
                       *  *   *   *     ***** * ***  * *  ***** **  **  *  ****  

consensus_189#0      TGAAAGAATA--TTACGTCCAAAG--TTTATGCAATAATAAACAGTTTATAAGTTATTAA 353
consensus_189#1      TTGTTGTCCAGCTTGTGTCCAAAGAGTTTCGCTGATTCCGAGCA-CTGGCAATTTGTATC 315
                     *    *   *  **  ********  ***     **    * **  *   ** ** *   

consensus_189#0      CACACACATAAAAGTCAGGGACGTTACTTAAATTGACTGGCGGTTGCG 401
consensus_189#1      TCCTCATTTCCATGTGGGGT---------------------------- 335
                       * **  *  * **  **