These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [AAATGCAAAGTGAATTGGTTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGAAAAATAGTGAATTATCAAACAAAATGACTTAACTAAATTGAAAGATATTAAAAAGAATTTTGAGAGTTCTACGAGAAACTTGAAGTTATTGTTAAGTCAAATGGAAACTGATGCACTAGAAGACGAATTATCATGTGTCGGTCAACTAGCGCAAACAACAGCAAATCAACTGAAACTTAGTCACTCAAGACTTGAAGAAAATCTGGACTCAATAAGGACTGACCTTATTCGTCTAAAGGCTGAATGTCACTAACTATCACTGAAACAAAGTCATTCGTTCGGCCGATGATAAATAAAACAACAAGA] [+] EMBL SMAA25564 [AAATGCAAAGTGAATTGGTTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGAAAAATAGTGAATTATCAAACAAAATGACTTAACTAAATTGAAAGATATTAAAAAGAATTTTGAGAGTTCTACGAGAAACTTGAAGTTATTGTTAAGTCAAATGGAAACTGATGCACTAGAAGACGAATTATCATGTGTCGGTCAACTAGCGCAAACAACAGCAAATCAACTGAAACTTAGTCACTCAAGACTTGAAGAAAATCTGGACTCAATAAGGACTGACCTTATTCGTCTAAAGGCTGAATGTCACTAACTATCACTGAAACAAAGTCATTCGTTCGGCCGATGATAAATAAAACAACAAGA] consensusID : consensus_1902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [AAATGCGAAGTGAATTGGCTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGTAATATAGTGAATTATCAAACAAAATGACTTAACTAATTGTAGTAATATTAGTAATTCTGAGAGTGCACGAGTACCGAAGTTAGTGTAAGTCAATGGAACGAGGCACTAGTAGACGAATACAGGGTCGGTCACGAGCGCTAACTACAGCAAACAACTGTAACTTAGCCACTCTAAGACTTGAAGTAAACCGGGATCCATTAAGGACGGACCTTATTCGC] [+] EMBL SMAA25563 [AAATGCGAAGTGAATTGGCTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGTAATATAGTGAATTATCAAACAAAATGACTTAACTAATTGTAGTAATATTAGTAATTCTGAGAGTGCACGAGTACCGAAGTTAGTGTAAGTCAATGGAACGAGGCACTAGTAGACGAATACAGGGTCGGTCACGAGCGCTAACTACAGCAAACAACTGTAACTTAGCCACTCTAAGACTTGAAGTAAACCGGGATCCATTAAGGACGGACCTTATTCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1902#0 AAATGCAAAGTGAATTGGTTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGA 60 consensus_1902#1 AAATGCGAAGTGAATTGGCTAAGAACGTGTTTTACTCAATTAACAGGATATACTTTTAGT 60 ****** *********** **************************************** consensus_1902#0 AAAATAGTGAATTATCAAACAAAATGACTTAACTAAATTGAAAGATATTAAAAAGAATTT 120 consensus_1902#1 AATATAGTGAATTATCAAACAAAATGACTTAACTAATTGTAGTAATATTAGTAA---TTC 117 ** ********************************* * * ****** ** ** consensus_1902#0 TGAGAGTTCTACGAGAAACTTGAAGTTATTGTTAAGTCAAATGGAAACTGATGCACTAGA 180 consensus_1902#1 TGAGAGTGC-ACGAGTACC--GAAGTTAGTGT-AAGTCAA-TGGAA--CGAGGCACTAGT 170 ******* * ***** * * ******* *** ******* ***** ** ******* consensus_1902#0 AGACGAATTATCATGTGTCGGTCAACTAGCGCAAACAACAGCAAATCAACTGAAACTTAG 240 consensus_1902#1 AGACGAATA--CA-GGGTCGGTCA-CGAGCGCTAACTACAGCAAA-CAACTGTAACTTAG 225 ******** ** * ******** * ***** *** ******** ****** ******* consensus_1902#0 TCACTC-AAGACTTGAAGAAAATCTGGACTCAATAAGGACTGACCTTATTCGTCTAAAGG 299 consensus_1902#1 CCACTCTAAGACTTGAAGTAAACCGGGATCCATTAAGGACGGACCTTATTCGC------- 278 ***** *********** *** * *** ** ******* *********** consensus_1902#0 CTGAATGTCACTAACTATCACTGAAACAAAGTCATTCGTTCGGCCGATGATAAATAAAAC 359 consensus_1902#1 ------------------------------------------------------------ consensus_1902#0 AACAAGA 366 consensus_1902#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||