These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [TAGTTGGTAAAGTTCTTACATCCGAAGTCCCTAAATTATTCAGCGAGTGGCCAGAAAATATTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTCATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATCTTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTACGTGTCTAGATATTTTGCGGAAAGGTCAGTGGACTTTACTGGGGCGTTGTGACTCATCTGTCATAGAAAAATATCGTTCTGCTTGTAATGAATATTTTCCAATGGCAAATGCATTTCTAACAACCTCACAAATAGATATATTACGTCAGAATATGATTGAAGCAGCTAATTCATCAGCTATATCTGGCGTGTTCCTTATGCCGAATGACACAGATCAACTATTGG] [+] EMBL CD063028 [TAGTTGGTAAAGTTCTTACATCCGAAGTCCCTAAATTATTCAGCGAGTGGCCAGAAAATATTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTCATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATCTTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTACGTGTCTAGATATTTTGCGGAAAGGTCAGTGGACTTTACTGGGGCGTTGTGACTCATCTGTCATAGAAAAATATCGTTCTGCTTGTAATGAATATTTTCCAATGGCAAATGCATTTCTAACAACCTCACAAATAGATATATTACGTCAGAATATGATTGAAGCAGCTAATTCATCAGCTATATCTGGCGTGTTCCTTATGCCGAATGACACAGATCAACTATTGG] consensusID : consensus_1909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence [TCGGCACGAGGCGAGTGGCCAGAAAATATTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTCATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATCTTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTAC] [+] EMBL CD078110 [TCGGCACGAGGCGAGTGGCCAGAAAATATTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTCATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATCTTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1909#0 TAGTTGGTAAAGTTCTTACATCCGAAGTCCCTAAATTATTCAGCGAGTGGCCAGAAAATA 60 consensus_1909#1 --------------------------------TCGGCACGAGGCGAGTGGCCAGAAAATA 28 * ****************** consensus_1909#0 TTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTC 120 consensus_1909#1 TTTCATTTGTTCAAGAATATAATGAAATATTTAATCACCGTAATCAGGACACATATCCTC 88 ************************************************************ consensus_1909#0 ATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATC 180 consensus_1909#1 ATGTATTCAGATATACGTTGTGTCAATGTCTGATTGACCCACAACATAGAGATAATTATC 148 ************************************************************ consensus_1909#0 TTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTA 240 consensus_1909#1 TTACTAATATTCCTTTACCAAGTGATAAGTTTAAAGGTGTTACATGGCAAGAATGCCGTA 208 ************************************************************ consensus_1909#0 CGTGTCTAGATATTTTGCGGAAAGGTCAGTGGACTTTACTGGGGCGTTGTGACTCATCTG 300 consensus_1909#1 C----------------------------------------------------------- 209 * consensus_1909#0 TCATAGAAAAATATCGTTCTGCTTGTAATGAATATTTTCCAATGGCAAATGCATTTCTAA 360 consensus_1909#1 ------------------------------------------------------------ consensus_1909#0 CAACCTCACAAATAGATATATTACGTCAGAATATGATTGAAGCAGCTAATTCATCAGCTA 420 consensus_1909#1 ------------------------------------------------------------ consensus_1909#0 TATCTGGCGTGTTCCTTATGCCGAATGACACAGATCAACTATTGG 465 consensus_1909#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||