These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAAATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATGTTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGGAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAATTAAGGGTTATCCCCAGTTTTTAGTGAGATCTCTCCCAATGGAGTATATTTGGTCGCCGAAACAGGTTGGCAACGTGAATACATCGC] [+] EMBL SMAA28834 [ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAAATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATGTTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGGAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAATTAAGGGTTATCCCCAGTTTTTAGTGAGATCTCTCCCAATGGAGTATATTTGGTCGCCGAAACAGGTTGGCAACGTGAATACATCGC] consensusID : consensus_1919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAAATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATGTTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGTTTTCTATGATGCCATTATATACATATTAATACATGTCTAAAATTTGTATGTTCCTTTATAATCTCTCTTTCACATGTATGAATATCATTTATCAAAATATATTTTGATT] [+] EMBL SMAA28838 [ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAAATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATGTTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGTTTTCTATGATGCCATTATATACATATTAATACATGTCTAAAATTTGTATGTTCCTTTATAATCTCTCTTTCACATGTATGAATATCATTTATCAAAATATATTTTGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1919#0 ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAA 60 consensus_1919#1 ACATACACATACACACGCCTTATTTCACTTTTCTAAACTCTATTTTCATCGATGTAATAA 60 ************************************************************ consensus_1919#0 ATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATG 120 consensus_1919#1 ATAGCGTCGAACAGGTATATGTAAATCTGTTCAATGTTTTAGCATGAGTAAACACTCATG 120 ************************************************************ consensus_1919#0 TTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGGGAAGGTGCGAATAAG 180 consensus_1919#1 TTTTTGTTTTCTTCTTTCTTCCCTTCTTTTACAGTTTTAGCTAGTT----TTCTATGATG 176 ******************************************** * * * * * consensus_1919#0 CGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTT 240 consensus_1919#1 CCATTATATACATATTAATACATGTCTAAAATTTGTATGTTCCTTTATAATCTCTCTTTC 236 * * ** * * * * * ** * * *** * * * * * *** consensus_1919#0 TCTCCCGGAAATGCCTTGAATCAG--CCTATTTAGACCGTTTCTTCGCCAATTAAGGGTT 298 consensus_1919#1 ACATGTATGAATATCATTTATCAAAATATATTTTGATT---------------------- 274 * *** * * **** ***** ** consensus_1919#0 ATCCCCAGTTTTTAGTGAGATCTCTCCCAATGGAGTATATTTGGTCGCCGAAACAGGTTG 358 consensus_1919#1 ------------------------------------------------------------ consensus_1919#0 GCAACGTGAATACATCGC 376 consensus_1919#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||