cluster # 1924

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Schistosoma mansoni
cluster # 1924 cluster # 1924 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1924#0 length = 714 sequences # 1

consensus_1924#1 length = 486 sequences # 1

consensusID : consensus_1924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 714
fasta sequence

                              [TCCAGGCCAGAATTCGGCACGAGGGATGATTTTAATCGTTATATTGAATCTCTGCCCCTAACCAATACACCTGAAGTATTTGGTCTTCATTCAAACGCTGAAATCGGTTATTACACAAATGCAACAAAAGAAATTTGGAGTTATCTACTTGAATTACAACCACAGACAAGTAATCAAAAAAATTCAACAAATCGTGAAGAATTCATTTCACAAATAACACAAGGTTTATTAACTAGTTTACCAAAAATATTTGATAGAGAAGCTTTAAGAAAAAAATTAGGCATCAATATACAACCAATTACAGTTGTATTATTACAGGAACTAGAGAGGTTTAACTTACTTATCAAAAGAATGGATCAAACCCTTAGAACATTGAAACGTGCATTAAATGGTGAAGTTGGTATGTCAGCCGAACTTGATAATGTTGCACGTTCCCTATTTAATGGTCAACTACCAACTATATGGCAGCGTTTGGCTCCGGCGACTAAAAAGTCTTTAGGCAACTGGATGATACACTTTCATGATCGTCATAAACAATACACTACTTGGATTGAAAATGGTGATCCAGGTGTCATCTGGTTATCAGGTCTACATATTCCTGAATCGTTTTTGATGGCTTTAACTCANACAACATGTCGTCGTAATGGATGGCCATTGGANCAAAGTGTATTATATACAGCTGTAACTCAATATACAGATTCTACTGAAATACAA]

[+] EMBL CD080126             [TCCAGGCCAGAATTCGGCACGAGGGATGATTTTAATCGTTATATTGAATCTCTGCCCCTAACCAATACACCTGAAGTATTTGGTCTTCATTCAAACGCTGAAATCGGTTATTACACAAATGCAACAAAAGAAATTTGGAGTTATCTACTTGAATTACAACCACAGACAAGTAATCAAAAAAATTCAACAAATCGTGAAGAATTCATTTCACAAATAACACAAGGTTTATTAACTAGTTTACCAAAAATATTTGATAGAGAAGCTTTAAGAAAAAAATTAGGCATCAATATACAACCAATTACAGTTGTATTATTACAGGAACTAGAGAGGTTTAACTTACTTATCAAAAGAATGGATCAAACCCTTAGAACATTGAAACGTGCATTAAATGGTGAAGTTGGTATGTCAGCCGAACTTGATAATGTTGCACGTTCCCTATTTAATGGTCAACTACCAACTATATGGCAGCGTTTGGCTCCGGCGACTAAAAAGTCTTTAGGCAACTGGATGATACACTTTCATGATCGTCATAAACAATACACTACTTGGATTGAAAATGGTGATCCAGGTGTCATCTGGTTATCAGGTCTACATATTCCTGAATCGTTTTTGATGGCTTTAACTCANACAACATGTCGTCGTAATGGATGGCCATTGGANCAAAGTGTATTATATACAGCTGTAACTCAATATACAGATTCTACTGAAATACAA]




>consensus_1924#0
TCCAGGCCAGAATTCGGCACGAGGGATGATTTTAATCGTTATATTGAATCTCTGCCCCTA
ACCAATACACCTGAAGTATTTGGTCTTCATTCAAACGCTGAAATCGGTTATTACACAAAT
GCAACAAAAGAAATTTGGAGTTATCTACTTGAATTACAACCACAGACAAGTAATCAAAAA
AATTCAACAAATCGTGAAGAATTCATTTCACAAATAACACAAGGTTTATTAACTAGTTTA
CCAAAAATATTTGATAGAGAAGCTTTAAGAAAAAAATTAGGCATCAATATACAACCAATT
ACAGTTGTATTATTACAGGAACTAGAGAGGTTTAACTTACTTATCAAAAGAATGGATCAA
ACCCTTAGAACATTGAAACGTGCATTAAATGGTGAAGTTGGTATGTCAGCCGAACTTGAT
AATGTTGCACGTTCCCTATTTAATGGTCAACTACCAACTATATGGCAGCGTTTGGCTCCG
GCGACTAAAAAGTCTTTAGGCAACTGGATGATACACTTTCATGATCGTCATAAACAATAC
ACTACTTGGATTGAAAATGGTGATCCAGGTGTCATCTGGTTATCAGGTCTACATATTCCT
GAATCGTTTTTGATGGCTTTAACTCANACAACATGTCGTCGTAATGGATGGCCATTGGAN
CAAAGTGTATTATATACAGCTGTAACTCAATATACAGATTCTACTGAAATACAA

consensusID : consensus_1924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [GTATCTCGTCTGCAAAATGTCAAACAAACGACCAACCCCACTTATTTTCTACTAGACAGTTTTTCATGTCATGCATTAAGTTAACAAAAAGACAGTGATCTAAGGCTCTGCAGGATACATACGATTCACCACTATCCAATGGTAAGATGTACACTATCTTTTCTAATGATCTTTCTTAACCATCTCATCTGGTTTTGTTATGATTAAACTCTAGACTTCATGATCTTCATCGTGAGTTTTTCACCTTCAAACATCTTTTTAAGCCCTAAAATACTATTAACATGGCATTCTTATACTTTCTAATGGACTTATCTACTCTGTAATTATCCTAATTTTAGGAACTAGAGAGGTTTAACTTACTTATCAAAAGAATGGATCAAACCCTTAGAACATTGAAACGTGCATTAAATGGTGAAGTTGGTATGTCAGCCGAACTTGATAATGTTGCACGTTCCCTATTTAATGGTCAACTACCAACTATATGGC]

[-] EMBL CD089830             [GTATCTCGTCTGCAAAATGTCAAACAAACGACCAACCCCACTTATTTTCTACTAGACAGTTTTTCATGTCATGCATTAAGTTAACAAAAAGACAGTGATCTAAGGCTCTGCAGGATACATACGATTCACCACTATCCAATGGTAAGATGTACACTATCTTTTCTAATGATCTTTCTTAACCATCTCATCTGGTTTTGTTATGATTAAACTCTAGACTTCATGATCTTCATCGTGAGTTTTTCACCTTCAAACATCTTTTTAAGCCCTAAAATACTATTAACATGGCATTCTTATACTTTCTAATGGACTTATCTACTCTGTAATTATCCTAATTTTAGGAACTAGAGAGGTTTAACTTACTTATCAAAAGAATGGATCAAACCCTTAGAACATTGAAACGTGCATTAAATGGTGAAGTTGGTATGTCAGCCGAACTTGATAATGTTGCACGTTCCCTATTTAATGGTCAACTACCAACTATATGGC]




>consensus_1924#1
GTATCTCGTCTGCAAAATGTCAAACAAACGACCAACCCCACTTATTTTCTACTAGACAGT
TTTTCATGTCATGCATTAAGTTAACAAAAAGACAGTGATCTAAGGCTCTGCAGGATACAT
ACGATTCACCACTATCCAATGGTAAGATGTACACTATCTTTTCTAATGATCTTTCTTAAC
CATCTCATCTGGTTTTGTTATGATTAAACTCTAGACTTCATGATCTTCATCGTGAGTTTT
TCACCTTCAAACATCTTTTTAAGCCCTAAAATACTATTAACATGGCATTCTTATACTTTC
TAATGGACTTATCTACTCTGTAATTATCCTAATTTTAGGAACTAGAGAGGTTTAACTTAC
TTATCAAAAGAATGGATCAAACCCTTAGAACATTGAAACGTGCATTAAATGGTGAAGTTG
GTATGTCAGCCGAACTTGATAATGTTGCACGTTCCCTATTTAATGGTCAACTACCAACTA
TATGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1924#0      ------------------TCCAGGCCAGAATTCGGCACGAGGGATGATTTTAATCGTTA- 41
consensus_1924#1      GTATCTCGTCTGCAAAATGTCAAACAAACGACCAACCCCACTTATT-TTCTACTAGACAG 59
                                          **  * *     *  * * *   **  ** ** * *  * 

consensus_1924#0      TATTGAATCTC-TGCCCCTAACCAATACACCTGAAGT-ATTTGGTCTTCATTCAAACGC- 98
consensus_1924#1      TTTTTCATGTCATGCATTAAGTTAACAAAAAGACAGTGATCTAAGGCTCTGCAGGATACA 119
                      * **  ** ** ***    *   ** * *     *** ** *     **      *  * 

consensus_1924#0      TGAAATCGGTTATTACACAAATGCAACAAAAGAAAT-----TTGGAGTTATCTACTTGAA 153
consensus_1924#1      TACGATTCACCACTATCCAATGGTAAGATGTACACTATCTTTTCTAATGATCTTTCTTAA 179
                      *   **     * **  ***  * ** *     * *     **  * * ****   * **

consensus_1924#0      TTACAACCACAGACAAGTAATCAAAAAAATTCAACAAATCGTGAAGAATTCATTTCACAA 213
consensus_1924#1      CCATCTCATCTGGTTTTGTTATGATTAAACTCTAGACTTCATG----ATCTTCATCGTGA 235
                        *   *  * *           *  *** ** * *  ** **    **     **   *

consensus_1924#0      ATAACACAAGGTTTATTAACTAGTTTACCAAAAATATTTGATAGAGAAGCTTTAAGAAAA 273
consensus_1924#1      GTTTTTCACCTTCAAACATCTTTTTAAGCCCTAAAATACTATTAACATGGCATTCTTATA 295
                       *    **   *  *  * **  ** * *   ** **   **  * * *   *    * *

consensus_1924#0      AAATTAGGCATCAATATACAACCAATTACAGTTGTATTATTACAGGAACTAGAGAGGTTT 333
consensus_1924#1      CTTTCTAATGGACTTATCTACTCTGTAATTATCCTA--ATTTTAGGAACTAGAGAGGTTT 353
                         *          ***  *  *  * *   *  **  ***  *****************

consensus_1924#0      AACTTACTTATCAAAAGAATGGATCAAACCCTTAGAACATTGAAACGTGCATTAAATGGT 393
consensus_1924#1      AACTTACTTATCAAAAGAATGGATCAAACCCTTAGAACATTGAAACGTGCATTAAATGGT 413
                      ************************************************************

consensus_1924#0      GAAGTTGGTATGTCAGCCGAACTTGATAATGTTGCACGTTCCCTATTTAATGGTCAACTA 453
consensus_1924#1      GAAGTTGGTATGTCAGCCGAACTTGATAATGTTGCACGTTCCCTATTTAATGGTCAACTA 473
                      ************************************************************

consensus_1924#0      CCAACTATATGGCAGCGTTTGGCTCCGGCGACTAAAAAGTCTTTAGGCAACTGGATGATA 513
consensus_1924#1      CCAACTATATGGC----------------------------------------------- 486
                      *************                                               

consensus_1924#0      CACTTTCATGATCGTCATAAACAATACACTACTTGGATTGAAAATGGTGATCCAGGTGTC 573
consensus_1924#1      ------------------------------------------------------------
                                                                                  

consensus_1924#0      ATCTGGTTATCAGGTCTACATATTCCTGAATCGTTTTTGATGGCTTTAACTCANACAACA 633
consensus_1924#1      ------------------------------------------------------------
                                                                                  

consensus_1924#0      TGTCGTCGTAATGGATGGCCATTGGANCAAAGTGTATTATATACAGCTGTAACTCAATAT 693
consensus_1924#1      ------------------------------------------------------------
                                                                                  

consensus_1924#0      ACAGATTCTACTGAAATACAA 714
consensus_1924#1      ---------------------