These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [GACGTGCTCGTTGGAAATTCAGTTTCGCAGTAGTCGGGATATTACATATATGTTATTTTACTTTAGAATCAATCCTCAGTTTATCTCATTTATTAAGTTCAGCCTTGATAATGTCCTGAAATTTCCTCTACGTTGCCCTGAGAGCTGTAACTTGGATACTGAACGTAGCTGATATCAACTTACTTATATTTGATCATCAATATATTGAAAATAGTGATCGTGTTTTGTGGGATAACCCAGATCGGAACGTTTTGTCAAGCATCGAGAACTAGAAAAAGTGGGAAATCGTTTGACGAAGCTATTATTCTTTGTTAACTGGAAGGTCTTTGGTATGTGTGCCCATATACACCCCGTCAGAAGTGTAAATATCCAAAATCAGGATGATGAAGTTCCGCTATCATTTGCATTGAGAATTATAACAGTTC] [+] EMBL CD197940 [GACGTGCTCGTTGGAAATTCAGTTTCGCAGTAGTCGGGATATTACATATATGTTATTTTACTTTAGAATCAATCCTCAGTTTATCTCATTTATTAAGTTCAGCCTTGATAATGTCCTGAAATTTCCTCTACGTTGCCCTGAGAGCTGTAACTTGGATACTGAACGTAGCTGATATCAACTTACTTATATTTGATCATCAATATATTGAAAATAGTGATCGTGTTTTGTGGGATAACCCAGATCGGAACGTTTTGTCAAGCATCGAGAACTAGAAAAAGTGGGAAATCGTTTGACGAAGCTATTATTCTTTGTTAACTGGAAGGTCTTTGGTATGTGTGCCCATATACACCCCGTCAGAAGTGTAAATATCCAAAATCAGGATGATGAAGTTCCGCTATCATTTGCATTGAGAATTATAACAGTTC] consensusID : consensus_1935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 131 fasta sequence [TCCGAATAGCTGTAAGTTTTTTTTTCTAATACTTTAATTCATGCAATTTAACGATTGGAAATATTGTTTTTAATAATTTGTGAGGAGACAGTTTTGAACTGTTATAATTCTCAATGCAAATGATAGCGGAA] [+] EMBL CD063129 [TCCGAATAGCTGTAAGTTTTTTTTTCTAATACTTTAATTCATGCAATTTAACGATTGGAAATATTGTTTTTAATAATTTGTGAGGAGACAGTTTTGAACTGTTATAATTCTCAATGCAAATGATAGCGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1935#0 GACGTGCTCGTTGGAAATTCAGTTTCGCAGTAGTCGGGATATTACATATATGTTATTTTA 60 consensus_1935#1 ------------------------------------------------------------ consensus_1935#0 CTTTAGAATCAATCCTCAGTTTATCTCATTTATTAAGTTCAGCCTTGATAATGTCCTGAA 120 consensus_1935#1 ------------------------------------------TCCGAATA--GCTGTAAG 16 * *** * * * consensus_1935#0 ATTTCCTCTACGTTGCCCTGAGAGCTGTAACTTGGATACTGAACGTAGCTGATATCAACT 180 consensus_1935#1 TTTTTTTTTCTAATACTTTAATTCATGCAATTTAACGATTGGA-------AATATTGTTT 69 *** * * * * * * ** ** ** * ** * **** * consensus_1935#0 TACTTATATTTGATCATCAATATATTGAAAATAGTGATCGTGTTTTGTGGGATAACCCAG 240 consensus_1935#1 T--TAATAATTTGTGAGGAGACAGTTTTGAACTGTTATAATTCTCAATG---CAAATGAT 124 * * *** ** * * * ** ** ** ** * * ** ** * consensus_1935#0 ATCGGAACGTTTTGTCAAGCATCGAGAACTAGAAAAAGTGGGAAATCGTTTGACGAAGCT 300 consensus_1935#1 AGCGGAA----------------------------------------------------- 131 * ***** consensus_1935#0 ATTATTCTTTGTTAACTGGAAGGTCTTTGGTATGTGTGCCCATATACACCCCGTCAGAAG 360 consensus_1935#1 ------------------------------------------------------------ consensus_1935#0 TGTAAATATCCAAAATCAGGATGATGAAGTTCCGCTATCATTTGCATTGAGAATTATAAC 420 consensus_1935#1 ------------------------------------------------------------ consensus_1935#0 AGTTC 425 consensus_1935#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||