cluster # 1940

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Schistosoma mansoni
cluster # 1940 cluster # 1940 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1940#0 length = 443 sequences # 1

consensus_1940#1 length = 344 sequences # 1

consensusID : consensus_1940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [CCTCGAGGCCANAATTCGGCACGAGGCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATTCATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGAAAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCTTTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATAACGTATTTTCTCTGTGATTCCTATCTGTTCTATTTTCACCATCTACCTTGGATGCATTTATTATTTTTAGGTAATTTTTGAAGGTCAGTCTCACATAAGTGTTTTTAGCACCTTTATCTAGCACACGGTGTCTGCATTNTTTTCCAGATATATTTTTATTTAATGCATCTGTGTATGTCTTACTNTATATTTACTGGNGTTTAA]

[+] EMBL CD080209             [CCTCGAGGCCANAATTCGGCACGAGGCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATTCATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGAAAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCTTTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATAACGTATTTTCTCTGTGATTCCTATCTGTTCTATTTTCACCATCTACCTTGGATGCATTTATTATTTTTAGGTAATTTTTGAAGGTCAGTCTCACATAAGTGTTTTTAGCACCTTTATCTAGCACACGGTGTCTGCATTNTTTTCCAGATATATTTTTATTTAATGCATCTGTGTATGTCTTACTNTATATTTACTGGNGTTTAA]




>consensus_1940#0
CCTCGAGGCCANAATTCGGCACGAGGCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGG
AGTCCTGTTCATTCATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTC
CTCACCAGGCGGAAAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACAT
TTATTTGATCTCTTTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATAA
CGTATTTTCTCTGTGATTCCTATCTGTTCTATTTTCACCATCTACCTTGGATGCATTTAT
TATTTTTAGGTAATTTTTGAAGGTCAGTCTCACATAAGTGTTTTTAGCACCTTTATCTAG
CACACGGTGTCTGCATTNTTTTCCAGATATATTTTTATTTAATGCATCTGTGTATGTCTT
ACTNTATATTTACTGGNGTTTAA

consensusID : consensus_1940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [AGACTTTAGCCGAATACTACAATGGTAACTCGACTTCCAAAATGGCCGTGAAGAGGGTTCTTCATCGAAGTCAAGCAATGCGTGAACGACATAGACCTGCGTTTTTAACCCTTTTCCGAAACCGATCACTTCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATTCATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGAAAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCTTTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATA]

[-] EMBL CD197186             [AGACTTTAGCCGAATACTACAATGGTAACTCGACTTCCAAAATGGCCGTGAAGAGGGTTCTTCATCGAAGTCAAGCAATGCGTGAACGACATAGACCTGCGTTTTTAACCCTTTTCCGAAACCGATCACTTCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATTCATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGAAAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCTTTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATA]




>consensus_1940#1
AGACTTTAGCCGAATACTACAATGGTAACTCGACTTCCAAAATGGCCGTGAAGAGGGTTC
TTCATCGAAGTCAAGCAATGCGTGAACGACATAGACCTGCGTTTTTAACCCTTTTCCGAA
ACCGATCACTTCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATTCA
TCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGAAA
GTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCTTT
CTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1940#0      ------------------------------------------------------------
consensus_1940#1      AGACTTTAGCCGAATACTACAATGGTAACTCGACTTCCAAAATGGCCGTGAAGAGGGTTC 60
                                                                                  

consensus_1940#0      -----------------------------------------------CCTCGAGGCCANA 13
consensus_1940#1      TTCATCGAAGTCAAGCAATGCGTGAACGACATAGACCTGCGTTTTTAACCCTTTTCCGAA 120
                                                                      * *    **  *

consensus_1940#0      ATTCGGCACGAGGCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATT 73
consensus_1940#1      ACCGATCACT--TCCTAGCTGTGTAGACAGTGATTGCTCGTGCTTGGAGTCCTGTTCATT 178
                      *     ***    ***********************************************

consensus_1940#0      CATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGA 133
consensus_1940#1      CATCCTTTGTCCTTCAGATAATAGTGTCGATGAGGTCTCCGAGTTTCCTCACCAGGCGGA 238
                      ************************************************************

consensus_1940#0      AAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCT 193
consensus_1940#1      AAGTTCCAAGAGTCCTTCTGGTCCATTTGTCTCACTACATTCTACATTTATTTGATCTCT 298
                      ************************************************************

consensus_1940#0      TTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATAACGTATTTTCTCTG 253
consensus_1940#1      TTCTGTTTTCCCACGTTGATTTATTTTCCAGGTCTGTCAGCGAATA-------------- 344
                      **********************************************              

consensus_1940#0      TGATTCCTATCTGTTCTATTTTCACCATCTACCTTGGATGCATTTATTATTTTTAGGTAA 313
consensus_1940#1      ------------------------------------------------------------
                                                                                  

consensus_1940#0      TTTTTGAAGGTCAGTCTCACATAAGTGTTTTTAGCACCTTTATCTAGCACACGGTGTCTG 373
consensus_1940#1      ------------------------------------------------------------
                                                                                  

consensus_1940#0      CATTNTTTTCCAGATATATTTTTATTTAATGCATCTGTGTATGTCTTACTNTATATTTAC 433
consensus_1940#1      ------------------------------------------------------------
                                                                                  

consensus_1940#0      TGGNGTTTAA 443
consensus_1940#1      ----------