These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1967#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTGAACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAAACGTCCAACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTTTTGGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCACTAGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACTATTTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGATGGGTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTATCTCTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT] [+] EMBL CD149493 [ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTGAACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAAACGTCCAACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTTTTGGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCACTAGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACTATTTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGATGGGTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTATCTCTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT] consensusID : consensus_1967#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [TGTTTGCGTTACCTATGTCTTTTAAAAGGATAGGATGAGAAGCAATGAACCGTTTCCGAAAAGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCGGCATTTCGTGATAAAGGTGAATGTGCGAAGCAAGACTTGTACCACAGCAGTACCTTAAAAAATTGGTCATTGGAAGATATATTCGGAATAAGTCAGTCAGT] [+] EMBL CD132346 [TGTTTGCGTTACCTATGTCTTTTAAAAGGATAGGATGAGAAGCAATGAACCGTTTCCGAAAAGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCGGCATTTCGTGATAAAGGTGAATGTGCGAAGCAAGACTTGTACCACAGCAGTACCTTAAAAAATTGGTCATTGGAAGATATATTCGGAATAAGTCAGTCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1967#0 ATAGTTGTGTGTTATGCATCGTCCCAGCTGCTATCTCGATGTAAATCTGTGGTCGAAGTG 60 consensus_1967#1 --------------------------------------------------------TGTT 4 ** consensus_1967#0 AACTCTGGCTTTAAATTTGGATCAGTGTGGCTAAACTAAGAAGTGATATGGTTTCACAAA 120 consensus_1967#1 TGCGTTACCTATGTCTTTTAAAAGGATAGGATGAG--AAGCAATGA-ACCGTTTCCGAAA 61 * * ** * *** * * ** * * *** * *** * ***** *** consensus_1967#0 ACGTCC--AACTGTTGATCCGGACCTTGCTAGATCTAAATTAGGTTCCTTAGTTTTAGTT 178 consensus_1967#1 AGGTCTCAGATAATCGAACTGCCAACTGATGGTCCTACAT--GTTCACATGGTCCTA-TG 118 * *** * * ** * * ** * * *** ** * * * * ** ** * consensus_1967#0 TTGGTAACTGGAAACTGAGTAGCATCCTGATACATTTAGCAGCACTGAATAATACACTCA 238 consensus_1967#1 TTGAAAAT----AGTTGATCAGATCTCCAATTCATCTCAATATGCTTGTTCG-GCATTTC 173 *** ** * *** ** * ** *** * ** * ** * consensus_1967#0 CTAGATAACAATCAATTGCTTCGTACTAATTGAATGGTCCCATTGTCAGTTTGTTTCACT 298 consensus_1967#1 GT-GATAAAGGTGAAT--GTGCGAAGCAA--GACTTGTACCACAG-CAGTACCTTAAAAA 227 * ***** * *** * ** * ** ** * ** *** * **** ** * consensus_1967#0 ATTTTTATTAGTTTTATTTCTTTGTAATCCTTTAAAGAGTAACATATTGAACAAACAGAT 358 consensus_1967#1 ATTGGTCATTGGAAGATATATTCGGAATAAGTCAGTCAGT-------------------- 267 *** * * * ** * ** * *** * * *** consensus_1967#0 GGGTGCATTGCTTCAAGCTAACAAACTTCGTTCAATTTTTGTCATAATGACTATGTTTAT 418 consensus_1967#1 ------------------------------------------------------------ consensus_1967#0 CTCTATGTTACAGGAACCGTTTCCGAAAAGGTCTCAAATAATCGAACTGCCAACTGATGG 478 consensus_1967#1 ------------------------------------------------------------ consensus_1967#0 TCCTACATGTTCACATGGTCCTATGTTGAAAATAGTTGGACAGAT 523 consensus_1967#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||