cluster # 1982

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Schistosoma mansoni
cluster # 1982 cluster # 1982 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1982#0 length = 631 sequences # 1

consensus_1982#1 length = 437 sequences # 1

consensusID : consensus_1982#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [TGCTTTTAGATAGAGGATTTTCTTTATCTAAAGTTGGATTTTGGACTGGTGTTGTTGGACAGTTGGCATCTATAATTGGGTCTACATCTGGATATTATATTCAGAAAAAGCTCAGATCTCCACTGACTTCAGTTTTAAGCCTGATGATAATTCGTGCATGTCTACAGTTCCCTTTAACAATGATTGCTTTCAAATCTATTTGGACAAGTGCACCTAACGTTTCTTTCTGGATAGGTTGTTTATTGATGGATAGTTTACTAGTTGTAAGTGGAGGGATTACAACAATTATATTCACATTGATGATGCATTGTACATGTTCTGAAACATCTAAAGCTTATCAAGCAACTCATTATTCCATATTAAGTACAGCAGAATTATTGGGAAAACTTTTATTTGGTACAATAGCTGCATACTTTACAGATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTCTATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCGATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAATAAATGAAATTGGATTTTNNNNNANAAAANN]

[+] EMBL CD080633             [TGCTTTTAGATAGAGGATTTTCTTTATCTAAAGTTGGATTTTGGACTGGTGTTGTTGGACAGTTGGCATCTATAATTGGGTCTACATCTGGATATTATATTCAGAAAAAGCTCAGATCTCCACTGACTTCAGTTTTAAGCCTGATGATAATTCGTGCATGTCTACAGTTCCCTTTAACAATGATTGCTTTCAAATCTATTTGGACAAGTGCACCTAACGTTTCTTTCTGGATAGGTTGTTTATTGATGGATAGTTTACTAGTTGTAAGTGGAGGGATTACAACAATTATATTCACATTGATGATGCATTGTACATGTTCTGAAACATCTAAAGCTTATCAAGCAACTCATTATTCCATATTAAGTACAGCAGAATTATTGGGAAAACTTTTATTTGGTACAATAGCTGCATACTTTACAGATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTCTATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCGATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAATAAATGAAATTGGATTTTNNNNNANAAAANN]




>consensus_1982#0
TGCTTTTAGATAGAGGATTTTCTTTATCTAAAGTTGGATTTTGGACTGGTGTTGTTGGAC
AGTTGGCATCTATAATTGGGTCTACATCTGGATATTATATTCAGAAAAAGCTCAGATCTC
CACTGACTTCAGTTTTAAGCCTGATGATAATTCGTGCATGTCTACAGTTCCCTTTAACAA
TGATTGCTTTCAAATCTATTTGGACAAGTGCACCTAACGTTTCTTTCTGGATAGGTTGTT
TATTGATGGATAGTTTACTAGTTGTAAGTGGAGGGATTACAACAATTATATTCACATTGA
TGATGCATTGTACATGTTCTGAAACATCTAAAGCTTATCAAGCAACTCATTATTCCATAT
TAAGTACAGCAGAATTATTGGGAAAACTTTTATTTGGTACAATAGCTGCATACTTTACAG
ATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTC
TATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCG
ATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAA
TAAATGAAATTGGATTTTNNNNNANAAAANN

consensusID : consensus_1982#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [TAAAAAAGCATGCTTTAATTGGGTCCATAACCGGCTACTTTACAGATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTCTATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCGATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAATAAATGAAATTGGATTATATCAAATAAACTAAGACAAAATTCTAGTTGAAAGTTTTGTTAAGTTCATGCTACTCACTAGAGGAACAGTTTTTATTTTACAAAGAAGAAAATCCATACGAAATTATAAGTCAATTAACTAGTTGGGTTAATGTGGTGTGGGCGTCTTATATTTACATTAACATTATATGGGGAGGGGGCCACGCCTTAAATGT]

[+] EMBL CD135771             [TAAAAAAGCATGCTTTAATTGGGTCCATAACCGGCTACTTTACAGATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTCTATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCGATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAATAAATGAAATTGGATTATATCAAATAAACTAAGACAAAATTCTAGTTGAAAGTTTTGTTAAGTTCATGCTACTCACTAGAGGAACAGTTTTTATTTTACAAAGAAGAAAATCCATACGAAATTATAAGTCAATTAACTAGTTGGGTTAATGTGGTGTGGGCGTCTTATATTTACATTAACATTATATGGGGAGGGGGCCACGCCTTAAATGT]




>consensus_1982#1
TAAAAAAGCATGCTTTAATTGGGTCCATAACCGGCTACTTTACAGATGTATTCGGATATG
GAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTCTATATGTTTATAAAT
ATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCGATCTAGTTTACTTGT
GAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAATAAATGAAATTGGAT
TATATCAAATAAACTAAGACAAAATTCTAGTTGAAAGTTTTGTTAAGTTCATGCTACTCA
CTAGAGGAACAGTTTTTATTTTACAAAGAAGAAAATCCATACGAAATTATAAGTCAATTA
ACTAGTTGGGTTAATGTGGTGTGGGCGTCTTATATTTACATTAACATTATATGGGGAGGG
GGCCACGCCTTAAATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1982#0      TGCTTTTAGATAGAGGATTTTCTTTATCTAAAGTTGGATTTTGGACTGGTGTTGTTGGAC 60
consensus_1982#1      ------------------------------------------------------------
                                                                                  

consensus_1982#0      AGTTGGCATCTATAATTGGGTCTACATCTGGATATTATATTCAGAAAAAGCTCAGATCTC 120
consensus_1982#1      ------------------------------------------------------------
                                                                                  

consensus_1982#0      CACTGACTTCAGTTTTAAGCCTGATGATAATTCGTGCATGTCTACAGTTCCCTTTAACAA 180
consensus_1982#1      ------------------------------------------------------------
                                                                                  

consensus_1982#0      TGATTGCTTTCAAATCTATTTGGACAAGTGCACCTAACGTTTCTTTCTGGATAGGTTGTT 240
consensus_1982#1      ------------------------------------------------------------
                                                                                  

consensus_1982#0      TATTGATGGATAGTTTACTAGTTGTAAGTGGAGGGATTACAACAATTATATTCACATTGA 300
consensus_1982#1      ------------------------------------------------------------
                                                                                  

consensus_1982#0      TGATGCATTGTACATGTTCTGAAACATCTAAAGCTTATCAAGCAACTCATTATTCCATAT 360
consensus_1982#1      ------------------------------------------------------------
                                                                                  

consensus_1982#0      TAAGTACAGCAGAATTATTGGGAAAACTTTTATTTGGTACAATAGCTGCATACTTTACAG 420
consensus_1982#1      --------------TAAAAAAGCATGCTTTAATTGGGTCCA-TAACCGGCTACTTTACAG 45
                                    * *    * *  **** *** *** ** ** * *  **********

consensus_1982#0      ATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTC 480
consensus_1982#1      ATGTATTCGGATATGGAATGGCTTATTTGTGCTTTTTAATTTTATCTATACTTCCAATTC 105
                      ************************************************************

consensus_1982#0      TATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCG 540
consensus_1982#1      TATATGTTTATAAATATTCTGGGAAATTTCGATTTCTTCCCTAAATAGTTATCTAACTCG 165
                      ************************************************************

consensus_1982#0      ATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAA 600
consensus_1982#1      ATCTAGTTTACTTGTGAATTACAAAAGATAGAAACAATCTTAAATTGTTGACTATGTAAA 225
                      ************************************************************

consensus_1982#0      TAAATGAAATTGGATTTTNNNNNANAAAANN----------------------------- 631
consensus_1982#1      TAAATGAAATTGGATTATATCAAATAAACTAAGACAAAATTCTAGTTGAAAGTTTTGTTA 285
                      **************** *     * ***                                

consensus_1982#0      ------------------------------------------------------------
consensus_1982#1      AGTTCATGCTACTCACTAGAGGAACAGTTTTTATTTTACAAAGAAGAAAATCCATACGAA 345
                                                                                  

consensus_1982#0      ------------------------------------------------------------
consensus_1982#1      ATTATAAGTCAATTAACTAGTTGGGTTAATGTGGTGTGGGCGTCTTATATTTACATTAAC 405
                                                                                  

consensus_1982#0      --------------------------------
consensus_1982#1      ATTATATGGGGAGGGGGCCACGCCTTAAATGT 437