cluster # 1987

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Schistosoma mansoni
cluster # 1987 cluster # 1987 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1987#0 length = 702 sequences # 1

consensus_1987#1 length = 317 sequences # 1

consensusID : consensus_1987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [CTCCNAGCCAAGATTCGGCACGAGGCAAATCCGAACTAAACAAAGAATGTAGAAGTACACATGAATCGCTTTTATTTTTCATGTTTGAAATTTGTTTTTTTCTGTTGGTTTTACAAAGGTGGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTATTATTATCCATGTCTTCGATTCGATCAGTATTAATTAGAATACATATGGTAGCAGTTTCCAAGTGTTCCTGTTTGGTCACCTTTCATTTGTTTATGAGTGTTTAGATGTATGTTTTCATCAATCTTTTTTGTTCGATTACTTTTTCAAGCTATTTAATTAGATAGACTAAAATCGGAGTTATGAATCATCTATTTCCCCATGTATTCACATTATTTCTCACTCTTCCCTTTTTATACTTTTTTCTGTTATGTAACTACGTTTACTTTATGATTTGAATTACTGACACTCAAGTTATCAATAAATTCTTAAAATATATCCATGTACGTCCAGGTTTACAAAGTATCCTCTGTTTCTCTTGATGTGTACAGTGTCATTTATACTTTTTAAATGAAGATTTACATGACTCATTCATCCTTTTGTATGTATATGTATATGCTAATGTAAACGTATATAGTTTTTCTTTTGATTTTCCCGCTAACCAAAATCATGATTTGTTTTCTTCATGATTATGATCTTAGTGTCCAACTCTCATCATGACCTCTT]

[+] EMBL CD080781             [CTCCNAGCCAAGATTCGGCACGAGGCAAATCCGAACTAAACAAAGAATGTAGAAGTACACATGAATCGCTTTTATTTTTCATGTTTGAAATTTGTTTTTTTCTGTTGGTTTTACAAAGGTGGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTATTATTATCCATGTCTTCGATTCGATCAGTATTAATTAGAATACATATGGTAGCAGTTTCCAAGTGTTCCTGTTTGGTCACCTTTCATTTGTTTATGAGTGTTTAGATGTATGTTTTCATCAATCTTTTTTGTTCGATTACTTTTTCAAGCTATTTAATTAGATAGACTAAAATCGGAGTTATGAATCATCTATTTCCCCATGTATTCACATTATTTCTCACTCTTCCCTTTTTATACTTTTTTCTGTTATGTAACTACGTTTACTTTATGATTTGAATTACTGACACTCAAGTTATCAATAAATTCTTAAAATATATCCATGTACGTCCAGGTTTACAAAGTATCCTCTGTTTCTCTTGATGTGTACAGTGTCATTTATACTTTTTAAATGAAGATTTACATGACTCATTCATCCTTTTGTATGTATATGTATATGCTAATGTAAACGTATATAGTTTTTCTTTTGATTTTCCCGCTAACCAAAATCATGATTTGTTTTCTTCATGATTATGATCTTAGTGTCCAACTCTCATCATGACCTCTT]




>consensus_1987#0
CTCCNAGCCAAGATTCGGCACGAGGCAAATCCGAACTAAACAAAGAATGTAGAAGTACAC
ATGAATCGCTTTTATTTTTCATGTTTGAAATTTGTTTTTTTCTGTTGGTTTTACAAAGGT
GGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTATTATTATCCATGTCTTCGATTC
GATCAGTATTAATTAGAATACATATGGTAGCAGTTTCCAAGTGTTCCTGTTTGGTCACCT
TTCATTTGTTTATGAGTGTTTAGATGTATGTTTTCATCAATCTTTTTTGTTCGATTACTT
TTTCAAGCTATTTAATTAGATAGACTAAAATCGGAGTTATGAATCATCTATTTCCCCATG
TATTCACATTATTTCTCACTCTTCCCTTTTTATACTTTTTTCTGTTATGTAACTACGTTT
ACTTTATGATTTGAATTACTGACACTCAAGTTATCAATAAATTCTTAAAATATATCCATG
TACGTCCAGGTTTACAAAGTATCCTCTGTTTCTCTTGATGTGTACAGTGTCATTTATACT
TTTTAAATGAAGATTTACATGACTCATTCATCCTTTTGTATGTATATGTATATGCTAATG
TAAACGTATATAGTTTTTCTTTTGATTTTCCCGCTAACCAAAATCATGATTTGTTTTCTT
CATGATTATGATCTTAGTGTCCAACTCTCATCATGACCTCTT

consensusID : consensus_1987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [TTTTTCTGTTGGTTTTACAAAGGTGGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTTTCTTATGATCTGCGATATTGTGTTTAATATTCTGTTGTTGTAGCTGTTGTCGGCGATCAATACTTTATCCAATTTTATTTTTGTCTCCATCATTGATTGGTTTATTATTATTTTGATAACATGTTGACGATGATGATCATTATTATTATTATTATTATCCATGTCTTCGATTCGATCAGTATTAATTAGAATACATATGGTAGCAGTTTCCAAGTGTTCCTGTTTGGTCACCTTTCATTTGTTTATGAGTGTTTA]

[+] EMBL CD189482             [TTTTTCTGTTGGTTTTACAAAGGTGGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTTTCTTATGATCTGCGATATTGTGTTTAATATTCTGTTGTTGTAGCTGTTGTCGGCGATCAATACTTTATCCAATTTTATTTTTGTCTCCATCATTGATTGGTTTATTATTATTTTGATAACATGTTGACGATGATGATCATTATTATTATTATTATTATCCATGTCTTCGATTCGATCAGTATTAATTAGAATACATATGGTAGCAGTTTCCAAGTGTTCCTGTTTGGTCACCTTTCATTTGTTTATGAGTGTTTA]




>consensus_1987#1
TTTTTCTGTTGGTTTTACAAAGGTGGTAATTAGGTGGAGGGAAAAAGTTACTATTATTAT
TTTCTTATGATCTGCGATATTGTGTTTAATATTCTGTTGTTGTAGCTGTTGTCGGCGATC
AATACTTTATCCAATTTTATTTTTGTCTCCATCATTGATTGGTTTATTATTATTTTGATA
ACATGTTGACGATGATGATCATTATTATTATTATTATTATCCATGTCTTCGATTCGATCA
GTATTAATTAGAATACATATGGTAGCAGTTTCCAAGTGTTCCTGTTTGGTCACCTTTCAT
TTGTTTATGAGTGTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1987#0      CTCCNAGCCAAGATTCGGCACGAGGCAAATCCGAACTAAACAAAGAATGTAGAAGTACAC 60
consensus_1987#1      ------------------------------------------------------------
                                                                                  

consensus_1987#0      ATGAATCGCTTTTATTTTTCATGTTTGAAATTTGTTTTTTTCTGTTGGTTTTACAAAGGT 120
consensus_1987#1      ------------------------------------TTTTTCTGTTGGTTTTACAAAGGT 24
                                                          ************************

consensus_1987#0      GGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTAT--TATTATCCATGTCTTCGAT 178
consensus_1987#1      GGTAATTAGGTGGAGGGAAAAAGTTACTATTATTATTTTCTTATGATCTGCGATATTGTG 84
                      ************************************* *  *** ***   *   * *  

consensus_1987#0      TCGATCAGTAT-TAATTAGAATACATATGG-----TAGCAGTTT--CCAAGTGTTCCTGT 230
consensus_1987#1      TTTAATATTCTGTTGTTGTAGCTGTTGTCGGCGATCAATACTTTATCCAATTTTATTTTT 144
                      *  *  * * * *  **  *     * * *      *  * ***  **** * *   * *

consensus_1987#0      TTGGTCACCTTTCATTTGTTTATGAGTGTTTAGATG-TATGTTTTCATCAATCTTTTTTG 289
consensus_1987#1      GTCTCCATCATTGATTGGTTTATTATTATTTTGATAACATGTTGACGATGATGATCATTA 204
                       *   ** * ** *** ****** * * *** ***   *****  *    **  *  ** 

consensus_1987#0      TT-CGATTACTTTT-TCAAGCTATTTAATTAGATAGACTAAAATCGGAGTTATGAATCAT 347
consensus_1987#1      TTATTATTATTATTATCCATGTCTTCGATTCGATCAGTATTAATTAGAAT-ACATATGGT 263
                      **   **** * ** ** *  * **  *** ***       ***  ** * *   **  *

consensus_1987#0      CTATTTCCCCATGTATTCACATTATTTCTCACTCTTCCCTT-TTTATACTTTTTTCTGTT 406
consensus_1987#1      AGCAGTTTCCAAGTGTTCCTGTT--TGGTCACCTTTCATTTGTTTATGAGTGTTTA---- 317
                           *  *** ** ***   **  *  ****  ***  ** *****   * ***     

consensus_1987#0      ATGTAACTACGTTTACTTTATGATTTGAATTACTGACACTCAAGTTATCAATAAATTCTT 466
consensus_1987#1      ------------------------------------------------------------
                                                                                  

consensus_1987#0      AAAATATATCCATGTACGTCCAGGTTTACAAAGTATCCTCTGTTTCTCTTGATGTGTACA 526
consensus_1987#1      ------------------------------------------------------------
                                                                                  

consensus_1987#0      GTGTCATTTATACTTTTTAAATGAAGATTTACATGACTCATTCATCCTTTTGTATGTATA 586
consensus_1987#1      ------------------------------------------------------------
                                                                                  

consensus_1987#0      TGTATATGCTAATGTAAACGTATATAGTTTTTCTTTTGATTTTCCCGCTAACCAAAATCA 646
consensus_1987#1      ------------------------------------------------------------
                                                                                  

consensus_1987#0      TGATTTGTTTTCTTCATGATTATGATCTTAGTGTCCAACTCTCATCATGACCTCTT 702
consensus_1987#1      --------------------------------------------------------