These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [TGCAATATGAATATGAATTTACCGATAATGATAATAATAAATCAAAGATATTAAAACTATAGCACAACCGATGAGATCAATTGCAATTGATAACTCTTTAGAACAGCCAGAACGTACATCGAGTATTTATAATACACGATCACAACAGTTATCAGTAGTACCAACNNNNNNNNNNNNNNNNNNNNNNNNCAAAATCCGATTCCTCCAGTCAATGAAATTTATATTGATGAAGACTATATTAGTCATTTATCATTAGATGACAAAAATAAGAAAGGTATTCTGGGACCTAAGATTGATAAAAATAATGAAGAACAAATCAGGAGCTTACAGTCTTTTTACTTCATTTTTCAATTTGGCAACATTATATGTCCCAAGACATATTTACTGGTTATATGGTGCAACATTTACACCGAGGGAGCAATTTCATCGAATGATGGCTGGTTGTGGAATGGAATTATACAGTNNNNNNNNNNNNNNNNNATTAAATGTAGCAGGTATATTCATTGGTTTCACCTTAGCCTCACCATATTTACGAACATGGCCATATATTCTATCTGGATTAATGAATTCATCAGAAATTAATTTATTCAATCCTTTATATTGGATAGATAGACCTATATTAGAACATATTGG] [+] EMBL CD081054 [TGCAATATGAATATGAATTTACCGATAATGATAATAATAAATCAAAGATATTAAAACTATAGCACAACCGATGAGATCAATTGCAATTGATAACTCTTTAGAACAGCCAGAACGTACATCGAGTATTTATAATACACGATCACAACAGTTATCAGTAGTACCAACNNNNNNNNNNNNNNNNNNNNNNNNCAAAATCCGATTCCTCCAGTCAATGAAATTTATATTGATGAAGACTATATTAGTCATTTATCATTAGATGACAAAAATAAGAAAGGTATTCTGGGACCTAAGATTGATAAAAATAATGAAGAACAAATCAGGAGCTTACAGTCTTTTTACTTCATTTTTCAATTTGGCAACATTATATGTCCCAAGACATATTTACTGGTTATATGGTGCAACATTTACACCGAGGGAGCAATTTCATCGAATGATGGCTGGTTGTGGAATGGAATTATACAGTNNNNNNNNNNNNNNNNNATTAAATGTAGCAGGTATATTCATTGGTTTCACCTTAGCCTCACCATATTTACGAACATGGCCATATATTCTATCTGGATTAATGAATTCATCAGAAATTAATTTATTCAATCCTTTATATTGGATAGATAGACCTATATTAGAACATATTGG] consensusID : consensus_2007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [ATGACACCATACCATATGATTCAACTATATCTCTCACATTTACCGATAAAACAAATATCCTGTTATCTAGTGATATTTCAGATCATATTGAACTTAATTTTAACAACAGTTTACCTACACCACCACCTGGTCGAGATAATGAACATTTAGATTATTCTAATACCACAAAAAATTCAGTGAATATTTCATTCAATAATTCCTTGGAGTTAGATTTCAACCCAACAATAAGTAAACTGAGTTATTTAATGCAATATGAATATGAATTTACCGATAATGATAATAATATTTATTGGATTGATCCTGGTAGTTTAAACAAAGATATTAAAACTATAGCACAACCGATGAGATCAATTGCAATTGATAACTCTTTAGAACAGCCAGAACGTACATCGAGTATTTATAATACACGATCACAACAGTTATCAGTAGTACCAACAACAACAGCGGCAACAA] [-] EMBL CD093837 [ATGACACCATACCATATGATTCAACTATATCTCTCACATTTACCGATAAAACAAATATCCTGTTATCTAGTGATATTTCAGATCATATTGAACTTAATTTTAACAACAGTTTACCTACACCACCACCTGGTCGAGATAATGAACATTTAGATTATTCTAATACCACAAAAAATTCAGTGAATATTTCATTCAATAATTCCTTGGAGTTAGATTTCAACCCAACAATAAGTAAACTGAGTTATTTAATGCAATATGAATATGAATTTACCGATAATGATAATAATATTTATTGGATTGATCCTGGTAGTTTAAACAAAGATATTAAAACTATAGCACAACCGATGAGATCAATTGCAATTGATAACTCTTTAGAACAGCCAGAACGTACATCGAGTATTTATAATACACGATCACAACAGTTATCAGTAGTACCAACAACAACAGCGGCAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2007#0 TGCAATATGAATATGAATTTACCGATAATGATAATAATAAATCAAAGATATTAAAACTAT 60 consensus_2007#1 ------------------------------------------------------------ consensus_2007#0 AGCACAACCGATGAGATCAATTGCAATTGATAACTCTTTAGAACAGCCAGAACGTACATC 120 consensus_2007#1 ------------------------------------------------------------ consensus_2007#0 GAGTATTTATAATACACGATCACAACAGTTATCAGTAGTACCAACNNNNNNNNNNNNNNN 180 consensus_2007#1 --------ATGACACCATACCATATGATTCAACTATATCTCTCACATTTACCGATAAAAC 52 ** * ** * ** * * * * * ** * ** consensus_2007#0 NNNNNNNNNCAAAATCCGAT--TCCTCCAGTCAATGAAATTTATATTGATGAAGACTATA 238 consensus_2007#1 AAATATCCT-GTTATCTAGTGATATTTCAG---ATCATATTGAACTTAATTTTAACAACA 108 *** * * * *** ** * *** * ** ** ** * * consensus_2007#0 TTAGTCATTTATCATTAGATGACAAAAATAAGAAAGGTATTCTGGGACCTAAGATTGATA 298 consensus_2007#1 GTTTACCTACACCACCACCTGGTCGAGATAATGAACATTTAGATTATTCTAATACC-ACA 167 * * * * ** * ** * **** ** * * **** * * * consensus_2007#0 AAAATAATGAAGAACAAATCAGGAGCTTACAGTCTTTTTACTTCATTTTTCAATTTGGCA 358 consensus_2007#1 AAAAATTCAGTGAATATTTCAT---TCAATAATTCCTTGGAGTTAGATTTCAACC---CA 221 **** *** * *** * * * ** * * ****** ** consensus_2007#0 ACATTATATGTCCCAAGACATATTTACTGGTTATATGGTGCAACATTTAC--ACCGAGGG 416 consensus_2007#1 ACAATAAGTAAACTGAG--TTATTTAATG-CAATATGAATATGAATTTACCGATAATGAT 278 *** ** * * ** ****** ** ***** ****** * * consensus_2007#0 AGCAAT-TTCATCGAATGATGGCTGGTTGTG-GAATGGAATTAT--ACAGTNNNNNNNNN 472 consensus_2007#1 AATAATATTTATTGGATTGATCCTGGTAGTTTAAACAAAGATATTAAAACTATAGCACAA 338 * *** ** ** * ** ***** ** ** * *** * * * consensus_2007#0 NNNNNNNNATTAAATGTAGCAGGTATATTCATTGGTTTCACCTTAGCCT-CACCA--TAT 529 consensus_2007#1 CCGATGAGATCAATTGCAATTGATA-ACTCTTTAGAACAGCCAGAACGTACATCGAGTAT 397 ** ** ** * * ** * ** ** * ** * * * ** * *** consensus_2007#0 TTACGA-ACATGGCCATATATTCTATCTGGATTAATGAATTCATCAGAAATTAATTTATT 588 consensus_2007#1 TTATAATACACGATCACAACAGTTATCAGTAGTACCAACAACAACAGCGGCAACAA---- 453 *** * *** * ** * **** * * ** * ** *** * consensus_2007#0 CAATCCTTTATATTGGATAGATAGACCTATATTAGAACATATTGG 633 consensus_2007#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||