These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [TCCAGGCCAANAATTTGGCACGAGGATATATGGCGATATCGAGTGAATATACGGACAGTACCATTTTACTTGAAAAGCTGAAAAGCACCATAATAAAGAGCAAACAATTGTGTAATTCCAGTCATGATATTAAGATCAATAATGAATATTCGGATACTATAAAAGGACATAGGAAGTCGGAGAATTGTTCTATGCAATCGCTTCATCAGACCGATGAGAAAAATTATGACTTTTCTCACTCCCAACTTCAGTTAGTTTTGAGAATGGAAGGCATCCGAGATTGGCTCAATTTAATTGCTTCATGTAGTCTACTGAATGAACTTGACCCACCACTTCCACGTATTTCTTCAATAGAAAGGCATATACGGATCGGATCTTGGAACCTTAACCGCTTCAATTTAAGTAAAGCTGAACATCCAGGGTTCATGGAAGTTGTTTGCCTGACCATTTTACGAATGAACGTCTCATTAATACTGCTTCAAGAAGTTTCAGACCCTTCAGTCGCTGATTATCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAAGTTATTGGAAAAGTCTTCGA] [+] EMBL CD081068 [TCCAGGCCAANAATTTGGCACGAGGATATATGGCGATATCGAGTGAATATACGGACAGTACCATTTTACTTGAAAAGCTGAAAAGCACCATAATAAAGAGCAAACAATTGTGTAATTCCAGTCATGATATTAAGATCAATAATGAATATTCGGATACTATAAAAGGACATAGGAAGTCGGAGAATTGTTCTATGCAATCGCTTCATCAGACCGATGAGAAAAATTATGACTTTTCTCACTCCCAACTTCAGTTAGTTTTGAGAATGGAAGGCATCCGAGATTGGCTCAATTTAATTGCTTCATGTAGTCTACTGAATGAACTTGACCCACCACTTCCACGTATTTCTTCAATAGAAAGGCATATACGGATCGGATCTTGGAACCTTAACCGCTTCAATTTAAGTAAAGCTGAACATCCAGGGTTCATGGAAGTTGTTTGCCTGACCATTTTACGAATGAACGTCTCATTAATACTGCTTCAAGAAGTTTCAGACCCTTCAGTCGCTGATTATCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAAGTTATTGGAAAAGTCTTCGA] consensusID : consensus_2008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [AGTACATTAATAAGACATGGGAGTAATTGTGTCTAAAGGATTACAATTTTAACTTATATATGGTAGTTATGTTCGCACTGTTGTGTTTGGTTTTGAAATACGTGACATAGTATCTTCAAACATCCACCCTTACTATCCTAAAATTCCATGCCCAGATTGGTGACGAGCTGAGATATAATCACAGTTAATGTAAGTTCAAACTCTATAATATATTTAGTTTAAAAACGTGGTTATTCTGGCGATTCTTCCCAGCAGTACTTTATCAAACTATGTAACTCGTTTCCTCATTAATACCTGTACATATTGCTAATCATTCTAGCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAGTTTATTGGAAAAGTCTTCGAACTCATTATCTGTTTCAAGAAAGTCGTTTACACGCAGTCC] [+] EMBL CD168035 [AGTACATTAATAAGACATGGGAGTAATTGTGTCTAAAGGATTACAATTTTAACTTATATATGGTAGTTATGTTCGCACTGTTGTGTTTGGTTTTGAAATACGTGACATAGTATCTTCAAACATCCACCCTTACTATCCTAAAATTCCATGCCCAGATTGGTGACGAGCTGAGATATAATCACAGTTAATGTAAGTTCAAACTCTATAATATATTTAGTTTAAAAACGTGGTTATTCTGGCGATTCTTCCCAGCAGTACTTTATCAAACTATGTAACTCGTTTCCTCATTAATACCTGTACATATTGCTAATCATTCTAGCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAGTTTATTGGAAAAGTCTTCGAACTCATTATCTGTTTCAAGAAAGTCGTTTACACGCAGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2008#0 TCCAGGCCAANAATTTGGCACGAGGATATATGGCGATATCGAGTGAATATACGGACAGTA 60 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 CCATTTTACTTGAAAAGCTGAAAAGCACCATAATAAAGAGCAAACAATTGTGTAATTCCA 120 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 GTCATGATATTAAGATCAATAATGAATATTCGGATACTATAAAAGGACATAGGAAGTCGG 180 consensus_2008#1 --------------------------------AGTACATTAATAAGACATGGGA------ 22 *** *** * ***** *** consensus_2008#0 AGAATTGT-TCTATGCAATCGCTTCATCAGACCGATGAGAAAAATTATGACTTTTCTCAC 239 consensus_2008#1 GTAATTGTGTCTAAAGGATTACAATTTTAACTTATATATGGTAGTTATG----TTCGCAC 78 ****** **** ** * * * * * ***** *** *** consensus_2008#0 TCCCAACTTCAGTTAGTTTTGAGAATGGAAGGCATCCGAGATTGGCTCAATTTAATTGCT 299 consensus_2008#1 T----GTTGTGTTTGGTTTTGA-AATACGTGACAT------------------AGTATCT 115 * * ** ******* *** * *** * * ** consensus_2008#0 TCATGTAGTCTACTGAATGAACTTGACCCACCACTTCCACGTATTTCTTCAATAGAAAGG 359 consensus_2008#1 TCAAACATCCACCCTTACTATCCTAAAATTCCATGCCCAGATTGGTGACGAGCTGAGATA 175 *** * * * * * * * * *** *** * * * ** * consensus_2008#0 CATATACGGATCGGATCTTGGAACCTTAACCGCTTCAATTTAAGTAAAGCTGAACATCCA 419 consensus_2008#1 TAATCACAGTTAA-----TGTAAGTTCAAACTCTATAATATATTTAGT-TTAAAAACGTG 229 * ** * * ** ** * ** * ** *** ** ** * ** * consensus_2008#0 GGGTTCATGGAAGTTGTTTGCCTGACCATTTTACGAATGAACGTCTCATTAATACTGCTT 479 consensus_2008#1 GTTATTCTGGCGATTCTTCCCAGCAGTACTTTATCAAACTATGTAAC-TCGTTTCCTCAT 288 * * *** ** ** * * * **** ** * ** * * * * * * consensus_2008#0 CAAGAAGTTTCAGACCCTTCAGTCGCTGATTATCTGTGCAATGAGCTAAATTATCCATCT 539 consensus_2008#1 TAATACCTGTACATATTGCTAATCATT--CTAGCTGTGCAATGAGCTAAATTATCCATCT 346 ** * * * * ** * ** *************************** consensus_2008#0 CTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAA 599 consensus_2008#1 CTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAA 406 ************************************************************ consensus_2008#0 GCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTT 659 consensus_2008#1 GCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTT 466 ************************************************************ consensus_2008#0 CTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAAGTTATTGGAAAAGTCTTCG 719 consensus_2008#1 CTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAGTTTATTGGAAAAGTCTTCG 526 **************************************** ****************** consensus_2008#0 A---------------------------------------- 720 consensus_2008#1 AACTCATTATCTGTTTCAAGAAAGTCGTTTACACGCAGTCC 567 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||