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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence
[TCCAGGCCAANAATTTGGCACGAGGATATATGGCGATATCGAGTGAATATACGGACAGTACCATTTTACTTGAAAAGCTGAAAAGCACCATAATAAAGAGCAAACAATTGTGTAATTCCAGTCATGATATTAAGATCAATAATGAATATTCGGATACTATAAAAGGACATAGGAAGTCGGAGAATTGTTCTATGCAATCGCTTCATCAGACCGATGAGAAAAATTATGACTTTTCTCACTCCCAACTTCAGTTAGTTTTGAGAATGGAAGGCATCCGAGATTGGCTCAATTTAATTGCTTCATGTAGTCTACTGAATGAACTTGACCCACCACTTCCACGTATTTCTTCAATAGAAAGGCATATACGGATCGGATCTTGGAACCTTAACCGCTTCAATTTAAGTAAAGCTGAACATCCAGGGTTCATGGAAGTTGTTTGCCTGACCATTTTACGAATGAACGTCTCATTAATACTGCTTCAAGAAGTTTCAGACCCTTCAGTCGCTGATTATCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAAGTTATTGGAAAAGTCTTCGA]
[+] EMBL CD081068 [TCCAGGCCAANAATTTGGCACGAGGATATATGGCGATATCGAGTGAATATACGGACAGTACCATTTTACTTGAAAAGCTGAAAAGCACCATAATAAAGAGCAAACAATTGTGTAATTCCAGTCATGATATTAAGATCAATAATGAATATTCGGATACTATAAAAGGACATAGGAAGTCGGAGAATTGTTCTATGCAATCGCTTCATCAGACCGATGAGAAAAATTATGACTTTTCTCACTCCCAACTTCAGTTAGTTTTGAGAATGGAAGGCATCCGAGATTGGCTCAATTTAATTGCTTCATGTAGTCTACTGAATGAACTTGACCCACCACTTCCACGTATTTCTTCAATAGAAAGGCATATACGGATCGGATCTTGGAACCTTAACCGCTTCAATTTAAGTAAAGCTGAACATCCAGGGTTCATGGAAGTTGTTTGCCTGACCATTTTACGAATGAACGTCTCATTAATACTGCTTCAAGAAGTTTCAGACCCTTCAGTCGCTGATTATCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAAGTTATTGGAAAAGTCTTCGA]
consensusID : consensus_2008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[AGTACATTAATAAGACATGGGAGTAATTGTGTCTAAAGGATTACAATTTTAACTTATATATGGTAGTTATGTTCGCACTGTTGTGTTTGGTTTTGAAATACGTGACATAGTATCTTCAAACATCCACCCTTACTATCCTAAAATTCCATGCCCAGATTGGTGACGAGCTGAGATATAATCACAGTTAATGTAAGTTCAAACTCTATAATATATTTAGTTTAAAAACGTGGTTATTCTGGCGATTCTTCCCAGCAGTACTTTATCAAACTATGTAACTCGTTTCCTCATTAATACCTGTACATATTGCTAATCATTCTAGCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAGTTTATTGGAAAAGTCTTCGAACTCATTATCTGTTTCAAGAAAGTCGTTTACACGCAGTCC]
[+] EMBL CD168035 [AGTACATTAATAAGACATGGGAGTAATTGTGTCTAAAGGATTACAATTTTAACTTATATATGGTAGTTATGTTCGCACTGTTGTGTTTGGTTTTGAAATACGTGACATAGTATCTTCAAACATCCACCCTTACTATCCTAAAATTCCATGCCCAGATTGGTGACGAGCTGAGATATAATCACAGTTAATGTAAGTTCAAACTCTATAATATATTTAGTTTAAAAACGTGGTTATTCTGGCGATTCTTCCCAGCAGTACTTTATCAAACTATGTAACTCGTTTCCTCATTAATACCTGTACATATTGCTAATCATTCTAGCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAGTTTATTGGAAAAGTCTTCGAACTCATTATCTGTTTCAAGAAAGTCGTTTACACGCAGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2008#0 TCCAGGCCAANAATTTGGCACGAGGATATATGGCGATATCGAGTGAATATACGGACAGTA 60
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 CCATTTTACTTGAAAAGCTGAAAAGCACCATAATAAAGAGCAAACAATTGTGTAATTCCA 120
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 GTCATGATATTAAGATCAATAATGAATATTCGGATACTATAAAAGGACATAGGAAGTCGG 180
consensus_2008#1 --------------------------------AGTACATTAATAAGACATGGGA------ 22
*** *** * ***** ***
consensus_2008#0 AGAATTGT-TCTATGCAATCGCTTCATCAGACCGATGAGAAAAATTATGACTTTTCTCAC 239
consensus_2008#1 GTAATTGTGTCTAAAGGATTACAATTTTAACTTATATATGGTAGTTATG----TTCGCAC 78
****** **** ** * * * * * ***** *** ***
consensus_2008#0 TCCCAACTTCAGTTAGTTTTGAGAATGGAAGGCATCCGAGATTGGCTCAATTTAATTGCT 299
consensus_2008#1 T----GTTGTGTTTGGTTTTGA-AATACGTGACAT------------------AGTATCT 115
* * ** ******* *** * *** * * **
consensus_2008#0 TCATGTAGTCTACTGAATGAACTTGACCCACCACTTCCACGTATTTCTTCAATAGAAAGG 359
consensus_2008#1 TCAAACATCCACCCTTACTATCCTAAAATTCCATGCCCAGATTGGTGACGAGCTGAGATA 175
*** * * * * * * * * *** *** * * * ** *
consensus_2008#0 CATATACGGATCGGATCTTGGAACCTTAACCGCTTCAATTTAAGTAAAGCTGAACATCCA 419
consensus_2008#1 TAATCACAGTTAA-----TGTAAGTTCAAACTCTATAATATATTTAGT-TTAAAAACGTG 229
* ** * * ** ** * ** * ** *** ** ** * ** *
consensus_2008#0 GGGTTCATGGAAGTTGTTTGCCTGACCATTTTACGAATGAACGTCTCATTAATACTGCTT 479
consensus_2008#1 GTTATTCTGGCGATTCTTCCCAGCAGTACTTTATCAAACTATGTAAC-TCGTTTCCTCAT 288
* * *** ** ** * * * **** ** * ** * * * * * *
consensus_2008#0 CAAGAAGTTTCAGACCCTTCAGTCGCTGATTATCTGTGCAATGAGCTAAATTATCCATCT 539
consensus_2008#1 TAATACCTGTACATATTGCTAATCATT--CTAGCTGTGCAATGAGCTAAATTATCCATCT 346
** * * * * ** * ** ***************************
consensus_2008#0 CTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAA 599
consensus_2008#1 CTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAA 406
************************************************************
consensus_2008#0 GCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTT 659
consensus_2008#1 GCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTT 466
************************************************************
consensus_2008#0 CTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAAGTTATTGGAAAAGTCTTCG 719
consensus_2008#1 CTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAGTTTATTGGAAAAGTCTTCG 526
**************************************** ******************
consensus_2008#0 A---------------------------------------- 720
consensus_2008#1 AACTCATTATCTGTTTCAAGAAAGTCGTTTACACGCAGTCC 567
*
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||