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Schistosoma mansoni
cluster # 2008 cluster # 2008       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2008#0 length = 720 sequences # 1  
consensus_2008#1 length = 567 sequences # 1  

consensusID : consensus_2008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 720
fasta sequence
                              [TCCAGGCCAANAATTTGGCACGAGGATATATGGCGATATCGAGTGAATATACGGACAGTACCATTTTACTTGAAAAGCTGAAAAGCACCATAATAAAGAGCAAACAATTGTGTAATTCCAGTCATGATATTAAGATCAATAATGAATATTCGGATACTATAAAAGGACATAGGAAGTCGGAGAATTGTTCTATGCAATCGCTTCATCAGACCGATGAGAAAAATTATGACTTTTCTCACTCCCAACTTCAGTTAGTTTTGAGAATGGAAGGCATCCGAGATTGGCTCAATTTAATTGCTTCATGTAGTCTACTGAATGAACTTGACCCACCACTTCCACGTATTTCTTCAATAGAAAGGCATATACGGATCGGATCTTGGAACCTTAACCGCTTCAATTTAAGTAAAGCTGAACATCCAGGGTTCATGGAAGTTGTTTGCCTGACCATTTTACGAATGAACGTCTCATTAATACTGCTTCAAGAAGTTTCAGACCCTTCAGTCGCTGATTATCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAAGTTATTGGAAAAGTCTTCGA]

[+] EMBL CD081068             [TCCAGGCCAANAATTTGGCACGAGGATATATGGCGATATCGAGTGAATATACGGACAGTACCATTTTACTTGAAAAGCTGAAAAGCACCATAATAAAGAGCAAACAATTGTGTAATTCCAGTCATGATATTAAGATCAATAATGAATATTCGGATACTATAAAAGGACATAGGAAGTCGGAGAATTGTTCTATGCAATCGCTTCATCAGACCGATGAGAAAAATTATGACTTTTCTCACTCCCAACTTCAGTTAGTTTTGAGAATGGAAGGCATCCGAGATTGGCTCAATTTAATTGCTTCATGTAGTCTACTGAATGAACTTGACCCACCACTTCCACGTATTTCTTCAATAGAAAGGCATATACGGATCGGATCTTGGAACCTTAACCGCTTCAATTTAAGTAAAGCTGAACATCCAGGGTTCATGGAAGTTGTTTGCCTGACCATTTTACGAATGAACGTCTCATTAATACTGCTTCAAGAAGTTTCAGACCCTTCAGTCGCTGATTATCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAAGTTATTGGAAAAGTCTTCGA]


>consensus_2008#0 TCCAGGCCAANAATTTGGCACGAGGATATATGGCGATATCGAGTGAATATACGGACAGTA CCATTTTACTTGAAAAGCTGAAAAGCACCATAATAAAGAGCAAACAATTGTGTAATTCCA GTCATGATATTAAGATCAATAATGAATATTCGGATACTATAAAAGGACATAGGAAGTCGG AGAATTGTTCTATGCAATCGCTTCATCAGACCGATGAGAAAAATTATGACTTTTCTCACT CCCAACTTCAGTTAGTTTTGAGAATGGAAGGCATCCGAGATTGGCTCAATTTAATTGCTT CATGTAGTCTACTGAATGAACTTGACCCACCACTTCCACGTATTTCTTCAATAGAAAGGC ATATACGGATCGGATCTTGGAACCTTAACCGCTTCAATTTAAGTAAAGCTGAACATCCAG GGTTCATGGAAGTTGTTTGCCTGACCATTTTACGAATGAACGTCTCATTAATACTGCTTC AAGAAGTTTCAGACCCTTCAGTCGCTGATTATCTGTGCAATGAGCTAAATTATCCATCTC TTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAG CGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTC TATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAAGTTATTGGAAAAGTCTTCGA



consensusID : consensus_2008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence
                              [AGTACATTAATAAGACATGGGAGTAATTGTGTCTAAAGGATTACAATTTTAACTTATATATGGTAGTTATGTTCGCACTGTTGTGTTTGGTTTTGAAATACGTGACATAGTATCTTCAAACATCCACCCTTACTATCCTAAAATTCCATGCCCAGATTGGTGACGAGCTGAGATATAATCACAGTTAATGTAAGTTCAAACTCTATAATATATTTAGTTTAAAAACGTGGTTATTCTGGCGATTCTTCCCAGCAGTACTTTATCAAACTATGTAACTCGTTTCCTCATTAATACCTGTACATATTGCTAATCATTCTAGCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAGTTTATTGGAAAAGTCTTCGAACTCATTATCTGTTTCAAGAAAGTCGTTTACACGCAGTCC]

[+] EMBL CD168035             [AGTACATTAATAAGACATGGGAGTAATTGTGTCTAAAGGATTACAATTTTAACTTATATATGGTAGTTATGTTCGCACTGTTGTGTTTGGTTTTGAAATACGTGACATAGTATCTTCAAACATCCACCCTTACTATCCTAAAATTCCATGCCCAGATTGGTGACGAGCTGAGATATAATCACAGTTAATGTAAGTTCAAACTCTATAATATATTTAGTTTAAAAACGTGGTTATTCTGGCGATTCTTCCCAGCAGTACTTTATCAAACTATGTAACTCGTTTCCTCATTAATACCTGTACATATTGCTAATCATTCTAGCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAGTTTATTGGAAAAGTCTTCGAACTCATTATCTGTTTCAAGAAAGTCGTTTACACGCAGTCC]


>consensus_2008#1 AGTACATTAATAAGACATGGGAGTAATTGTGTCTAAAGGATTACAATTTTAACTTATATA TGGTAGTTATGTTCGCACTGTTGTGTTTGGTTTTGAAATACGTGACATAGTATCTTCAAA CATCCACCCTTACTATCCTAAAATTCCATGCCCAGATTGGTGACGAGCTGAGATATAATC ACAGTTAATGTAAGTTCAAACTCTATAATATATTTAGTTTAAAAACGTGGTTATTCTGGC GATTCTTCCCAGCAGTACTTTATCAAACTATGTAACTCGTTTCCTCATTAATACCTGTAC ATATTGCTAATCATTCTAGCTGTGCAATGAGCTAAATTATCCATCTCTTCCCCACATAAA ACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAAGCGTCATGTTCGAT CCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTTCTATATAATTCGCG ATGTGGTATTCGGATTTCTCGGACAAGTTTATTGGAAAAGTCTTCGAACTCATTATCTGT TTCAAGAAAGTCGTTTACACGCAGTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2008#0      TCCAGGCCAANAATTTGGCACGAGGATATATGGCGATATCGAGTGAATATACGGACAGTA 60
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      CCATTTTACTTGAAAAGCTGAAAAGCACCATAATAAAGAGCAAACAATTGTGTAATTCCA 120
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      GTCATGATATTAAGATCAATAATGAATATTCGGATACTATAAAAGGACATAGGAAGTCGG 180
consensus_2008#1      --------------------------------AGTACATTAATAAGACATGGGA------ 22
                                                        ***  *** * ***** ***      

consensus_2008#0      AGAATTGT-TCTATGCAATCGCTTCATCAGACCGATGAGAAAAATTATGACTTTTCTCAC 239
consensus_2008#1      GTAATTGTGTCTAAAGGATTACAATTTTAACTTATATATGGTAGTTATG----TTCGCAC 78
                        ****** ****    **  *    * *        *    * *****    *** ***

consensus_2008#0      TCCCAACTTCAGTTAGTTTTGAGAATGGAAGGCATCCGAGATTGGCTCAATTTAATTGCT 299
consensus_2008#1      T----GTTGTGTTTGGTTTTGA-AATACGTGACAT------------------AGTATCT 115
                      *      *    ** ******* ***    * ***                  * *  **

consensus_2008#0      TCATGTAGTCTACTGAATGAACTTGACCCACCACTTCCACGTATTTCTTCAATAGAAAGG 359
consensus_2008#1      TCAAACATCCACCCTTACTATCCTAAAATTCCATGCCCAGATTGGTGACGAGCTGAGATA 175
                      ***   *  *  *   *  * * * *    ***   ***  *   *    *   ** *  

consensus_2008#0      CATATACGGATCGGATCTTGGAACCTTAACCGCTTCAATTTAAGTAAAGCTGAACATCCA 419
consensus_2008#1      TAATCACAGTTAA-----TGTAAGTTCAAACTCTATAATATATTTAGT-TTAAAAACGTG 229
                       *   ** * *       ** **  * ** * **  *** **  **    * ** *    

consensus_2008#0      GGGTTCATGGAAGTTGTTTGCCTGACCATTTTACGAATGAACGTCTCATTAATACTGCTT 479
consensus_2008#1      GTTATTCTGGCGATTCTTCCCAGCAGTACTTTATCAAACTATGTAAC-TCGTTTCCTCAT 288
                      *   *  ***   ** **  *   *  * ****  **   * **  * *   * *  * *

consensus_2008#0      CAAGAAGTTTCAGACCCTTCAGTCGCTGATTATCTGTGCAATGAGCTAAATTATCCATCT 539
consensus_2008#1      TAATACCTGTACATATTGCTAATCATT--CTAGCTGTGCAATGAGCTAAATTATCCATCT 346
                       ** *  * *          * **  *   ** ***************************

consensus_2008#0      CTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAA 599
consensus_2008#1      CTTCCCCACATAAAACGATGGGTTGAAAAATTTCCTCTATCTATTCCACCGTACTGGAAA 406
                      ************************************************************

consensus_2008#0      GCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTT 659
consensus_2008#1      GCGTCATGTTCGATCCAACCAACCGGTTCCATGTTCCGTGCAAAAGAGTATGCCGTATTT 466
                      ************************************************************

consensus_2008#0      CTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAAGTTATTGGAAAAGTCTTCG 719
consensus_2008#1      CTATATAATTCGCGATGTGGTATTCGGATTTCTCGGACAAGTTTATTGGAAAAGTCTTCG 526
                      ****************************************  ******************

consensus_2008#0      A---------------------------------------- 720
consensus_2008#1      AACTCATTATCTGTTTCAAGAAAGTCGTTTACACGCAGTCC 567
                      *                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)