These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [GCCAGATTAGATTTACTCGAAATATTGGACAATAAATTATCATTGATATGTGGCTAGTGGACTTAAATATGATTGGTTCCCTAATTTTTGTTCATGAATAACGTATCTGGCATAACATGATCCAGTCTAGTGATCGGATAATTTAGATCACCGGTTAACCGCTAAACAGAGAATATTTCTATTCAAACTTGATATCAGTTGGTCAATCTTGCTAAACCAAGCACTGTACGATTATCATTACATTAGATTATGAATTTTCTTAAAATCAACATTTATGTAATTATTGTCTTTGTATTCTATTATGAATATTTATATATTTATTTCAATCAAAAATCAAACCAACTAGATCTTTTTTACTTTCCATTCAGCCCGAAAAAGTTGCCGAATCTCTACAATTTTTTATCCAAGGATTAGGTTTAGCTGGTGGTTTAGTTAGTCGACGAATGAGTAGTACAATACCTGTAGCTAGAAATAGATCATTATCAATGGAAGAATATGATCAACCAAAAGGTGCATCAAATTGTATATTTCATAAAAATCGTAAATATAGTACAACTACTGGTAGATTAATACAAGATGATAGTCCAATTAATGAACAAGAAGATCANACTGAAGCTTAATTATTATACTCAGCATTATATAAATATATATCGATATATATATATATATACCTACCTATATAANTAGTTT] [+] EMBL CD081322 [GCCAGATTAGATTTACTCGAAATATTGGACAATAAATTATCATTGATATGTGGCTAGTGGACTTAAATATGATTGGTTCCCTAATTTTTGTTCATGAATAACGTATCTGGCATAACATGATCCAGTCTAGTGATCGGATAATTTAGATCACCGGTTAACCGCTAAACAGAGAATATTTCTATTCAAACTTGATATCAGTTGGTCAATCTTGCTAAACCAAGCACTGTACGATTATCATTACATTAGATTATGAATTTTCTTAAAATCAACATTTATGTAATTATTGTCTTTGTATTCTATTATGAATATTTATATATTTATTTCAATCAAAAATCAAACCAACTAGATCTTTTTTACTTTCCATTCAGCCCGAAAAAGTTGCCGAATCTCTACAATTTTTTATCCAAGGATTAGGTTTAGCTGGTGGTTTAGTTAGTCGACGAATGAGTAGTACAATACCTGTAGCTAGAAATAGATCATTATCAATGGAAGAATATGATCAACCAAAAGGTGCATCAAATTGTATATTTCATAAAAATCGTAAATATAGTACAACTACTGGTAGATTAATACAAGATGATAGTCCAATTAATGAACAAGAAGATCANACTGAAGCTTAATTATTATACTCAGCATTATATAAATATATATCGATATATATATATATATACCTACCTATATAANTAGTTT] consensusID : consensus_2020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [TAATTGATGGAAATTAAATACAGTTGGAATGAATCCAGCTGCGGAATCATATTTATTAATGCATCGTTTTGGTTCGGCTGCAGATTCAGAGGATGAAGTAGAAGTACGAGAAGTCCTTATAAAATTTCGTCAGTCACTTAGAACGGCGATTAACCCAAGGAATTTAAACAAATTCATTATGTCATTTATGTCACGTACAAAAATCTTGGAACATGTCGATCAAATAAGATGTCCCGTTCTATTTCTAACCGGTGCATTAGCATCACATAATCATACTGTGTTTCGTCTATACAATGCTGTTCTATCCGCTGTACGCAATGATCCGAATCTTCAAGGTAAAGTGGAGTTGATTCAACTAGACAACGTGGCAAATGTATTAAGTGAACAGCCCGAAAAAGTTGCCGAATCTCTACAATTTTTTATCCAAGGATTAG] [+] EMBL CD184666 [TAATTGATGGAAATTAAATACAGTTGGAATGAATCCAGCTGCGGAATCATATTTATTAATGCATCGTTTTGGTTCGGCTGCAGATTCAGAGGATGAAGTAGAAGTACGAGAAGTCCTTATAAAATTTCGTCAGTCACTTAGAACGGCGATTAACCCAAGGAATTTAAACAAATTCATTATGTCATTTATGTCACGTACAAAAATCTTGGAACATGTCGATCAAATAAGATGTCCCGTTCTATTTCTAACCGGTGCATTAGCATCACATAATCATACTGTGTTTCGTCTATACAATGCTGTTCTATCCGCTGTACGCAATGATCCGAATCTTCAAGGTAAAGTGGAGTTGATTCAACTAGACAACGTGGCAAATGTATTAAGTGAACAGCCCGAAAAAGTTGCCGAATCTCTACAATTTTTTATCCAAGGATTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2020#0 -------GCCAGATTAGATTTACTCGAAAT--ATTGGACAATAAATTATCATTGAT--AT 49 consensus_2020#1 TAATTGATGGAAATTAAATACAGTTGGAATGAATCCAGCTGCGGAATCATATTTATTAAT 60 * **** ** * * * *** ** * * * *** ** ** consensus_2020#0 GTGGCTAGTGGACTTAAATAT-GATTGGTTCCCTAATTTTTGTTCATGAATAACGTATCT 108 consensus_2020#1 GCATCGTTTTGGTTCGGCTGCAGATTCAGAGGATGAAGTAGAAGTACGAGAAGTCCTTAT 120 * * * * * * **** * * * * ** * * * consensus_2020#0 GGCATAACATGATCCAGTCTAGTGATCGGATAATTTAGATCACC-GGTTAACCGCTAAAC 167 consensus_2020#1 AAAATTTCGTCAGTCACTTAGAACGGCGATTAACCCAAGGAATTTAAACAAATTCATTAT 180 ** * * * ** * ** *** * * ** * * consensus_2020#0 AGAGAATATTTC-TATTCAAA---CTTGATATCAGTTGGTCAATCTTGCTAAACCAAGCA 223 consensus_2020#1 GTCATTTATGTCACGTACAAAAATCTTGGAACATGTCGATCAAATAAGATGTCCC--GTT 238 *** ** * **** **** * ** * **** * * ** * consensus_2020#0 CTGTACGATTATCATTACATTAG-ATTATG-AATTTTCTTAAAATCAACATTTATGTAAT 281 consensus_2020#1 CTATTTC-TAACCGGTGCATTAGCATCACATAATCATACTGTGTTT--CGTCTATACAAT 295 ** * * * * * ****** ** * *** * * * * * *** *** consensus_2020#0 TATTGTCTTTGTATTCTATTATGAATATTTATATATTTATTTCAATCAAAAATCAAACCA 341 consensus_2020#1 GCTGTTCTATCCGCTGTAC-GCAATGATCCGAATCTTCAAGGTAAAGTGGAGTTGATTCA 354 * *** * * ** * ** ** ** * ** * * * ** consensus_2020#0 ACTAGAT-------CTTTTTTACTTTCCATTCAGCCCGAAAAAGTTGCCGAATCTCTACA 394 consensus_2020#1 ACTAGACAACGTGGCAAATGTATTAAGTGAACAGCCCGAAAAAGTTGCCGAATCTCTACA 414 ****** * * ** * ***************************** consensus_2020#0 ATTTTTTATCCAAGGATTAGGTTTAGCTGGTGGTTTAGTTAGTCGACGAATGAGTAGTAC 454 consensus_2020#1 ATTTTTTATCCAAGGATTAG---------------------------------------- 434 ******************** consensus_2020#0 AATACCTGTAGCTAGAAATAGATCATTATCAATGGAAGAATATGATCAACCAAAAGGTGC 514 consensus_2020#1 ------------------------------------------------------------ consensus_2020#0 ATCAAATTGTATATTTCATAAAAATCGTAAATATAGTACAACTACTGGTAGATTAATACA 574 consensus_2020#1 ------------------------------------------------------------ consensus_2020#0 AGATGATAGTCCAATTAATGAACAAGAAGATCANACTGAAGCTTAATTATTATACTCAGC 634 consensus_2020#1 ------------------------------------------------------------ consensus_2020#0 ATTATATAAATATATATCGATATATATATATATATACCTACCTATATAANTAGTTT 690 consensus_2020#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||