These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [NAATCGNGCCGAGGCCAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTTAAAACCTTTCGGTGGCAAAATAATGTTCCAAGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATGTAAATATCATGTTCTTTTTGGTGTATAATTTCTTTGTTAAATAGGTTAACAGAAGAAAAAGTCGTTTATCCCTAAACTTATTTTATGTATTAAATCATTTGCTTGAAGAAAAGGATTAGGGTGTTATTCATTTGACATTTTTATCGATGATTAAATCATTTTTTCATTAAAAAAAACAAATATAAGTTTCTTTAAGCCCATTCTCGTTAATTGTACATTGAACTGGATATTATTTATTTTTAAACTTACCCAATATCAGAAACACAGTTGAGGTTATGATTAATGTTTCAGGACTCACAGTCATTTTCCTTCTATTTAATCAGTGGGCACTGCATGCTAGAGTGTAATCTTTACGGCAAACGTCTGGCGTTATTTGCAACCGACTGGTGTGAACATTTTATTTTAGCGCAGTGGATACAAAACGTAAACATAGTGAAAGTTAGGACTCACAAAATAAATTACTGATGAAGAATACACTTTTGTATGAAGTACTTCCCTATTAGATTGAACAGAANAATGATTAGATATTGGACACACCCACTGGAA] [+] EMBL CD081466 [NAATCGNGCCGAGGCCAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTTAAAACCTTTCGGTGGCAAAATAATGTTCCAAGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATGTAAATATCATGTTCTTTTTGGTGTATAATTTCTTTGTTAAATAGGTTAACAGAAGAAAAAGTCGTTTATCCCTAAACTTATTTTATGTATTAAATCATTTGCTTGAAGAAAAGGATTAGGGTGTTATTCATTTGACATTTTTATCGATGATTAAATCATTTTTTCATTAAAAAAAACAAATATAAGTTTCTTTAAGCCCATTCTCGTTAATTGTACATTGAACTGGATATTATTTATTTTTAAACTTACCCAATATCAGAAACACAGTTGAGGTTATGATTAATGTTTCAGGACTCACAGTCATTTTCCTTCTATTTAATCAGTGGGCACTGCATGCTAGAGTGTAATCTTTACGGCAAACGTCTGGCGTTATTTGCAACCGACTGGTGTGAACATTTTATTTTAGCGCAGTGGATACAAAACGTAAACATAGTGAAAGTTAGGACTCACAAAATAAATTACTGATGAAGAATACACTTTTGTATGAAGTACTTCCCTATTAGATTGAACAGAANAATGATTAGATATTGGACACACCCACTGGAA] consensusID : consensus_2028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence [CATCCTCCTTGTATCTCTTTGTTGTTATATGCTTGTGTGTGTGCGGTATTTTTCACTNGGTCTTTTCTTCAAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTNAAAACCTTTCGGTGGCAAAATAATGTTCCAAGGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATGTAAATAT] [+] EMBL SM871 [CATCCTCCTTGTATCTCTTTGTTGTTATATGCTTGTGTGTGTGCGGTATTTTTCACTNGGTCTTTTCTTCAAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTNAAAACCTTTCGGTGGCAAAATAATGTTCCAAGGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATGTAAATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2028#0 ----------------------------------------------------NAATCGNG 8 consensus_2028#1 CATCCTCCTTGTATCTCTTTGTTGTTATATGCTTGTGTGTGTGCGGTATTTTTCACTNGG 60 * * consensus_2028#0 CCGAGGCC---AATATCATTGTCAAGTAGTACGTATCATGTATCCTTTTAAAACCTTTCG 65 consensus_2028#1 TCTTTTCTTCAAATATCATTGTCAAGTAGTACGTATCATGTATCCTTTNAAAACCTTTCG 120 * * ************************************* *********** consensus_2028#0 GTGGCAAAATAATGTTCCAAG-AAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATG 124 consensus_2028#1 GTGGCAAAATAATGTTCCAAGGAAAAATAAGCACCTTTTTCTTACTGTTTTTATCATATG 180 ********************* ************************************** consensus_2028#0 TAAATATCATGTTCTTTTTGGTGTATAATTTCTTTGTTAAATAGGTTAACAGAAGAAAAA 184 consensus_2028#1 TAAATAT----------------------------------------------------- 187 ******* consensus_2028#0 GTCGTTTATCCCTAAACTTATTTTATGTATTAAATCATTTGCTTGAAGAAAAGGATTAGG 244 consensus_2028#1 ------------------------------------------------------------ consensus_2028#0 GTGTTATTCATTTGACATTTTTATCGATGATTAAATCATTTTTTCATTAAAAAAAACAAA 304 consensus_2028#1 ------------------------------------------------------------ consensus_2028#0 TATAAGTTTCTTTAAGCCCATTCTCGTTAATTGTACATTGAACTGGATATTATTTATTTT 364 consensus_2028#1 ------------------------------------------------------------ consensus_2028#0 TAAACTTACCCAATATCAGAAACACAGTTGAGGTTATGATTAATGTTTCAGGACTCACAG 424 consensus_2028#1 ------------------------------------------------------------ consensus_2028#0 TCATTTTCCTTCTATTTAATCAGTGGGCACTGCATGCTAGAGTGTAATCTTTACGGCAAA 484 consensus_2028#1 ------------------------------------------------------------ consensus_2028#0 CGTCTGGCGTTATTTGCAACCGACTGGTGTGAACATTTTATTTTAGCGCAGTGGATACAA 544 consensus_2028#1 ------------------------------------------------------------ consensus_2028#0 AACGTAAACATAGTGAAAGTTAGGACTCACAAAATAAATTACTGATGAAGAATACACTTT 604 consensus_2028#1 ------------------------------------------------------------ consensus_2028#0 TGTATGAAGTACTTCCCTATTAGATTGAACAGAANAATGATTAGATATTGGACACACCCA 664 consensus_2028#1 ------------------------------------------------------------ consensus_2028#0 CTGGAA 670 consensus_2028#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||