These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [TTTTGTCGAAAGAAAATGCAAAGCGTGGGGTATCAGAAATACCAAAGTTGATATCAACTAAAAGATTGATGCATTTCCGATCTCGATTCTTAAAATGTCCTCTCATTTTGCAATAGATGTTAATCTTTTTACTATTTGTGAGTTATACAATAAGAAACAATGATATCTAAATATTTTATGCGAAATACTGTAATAATGTAACGCAAAGTTCGTACATATCGTCAGTCGTTTTATTTCAAAAAACTGTGTGTAAGAAAATAACTCAACTTCATGTCAGGCAACGAAGACGCGGATACGAAAACCAATAAGTCAATCCAAAAGAATATTTGAATTTGAATAGAACATTCACGAACAGTCCTTGAATTG] [+] EMBL CD159949 [TTTTGTCGAAAGAAAATGCAAAGCGTGGGGTATCAGAAATACCAAAGTTGATATCAACTAAAAGATTGATGCATTTCCGATCTCGATTCTTAAAATGTCCTCTCATTTTGCAATAGATGTTAATCTTTTTACTATTTGTGAGTTATACAATAAGAAACAATGATATCTAAATATTTTATGCGAAATACTGTAATAATGTAACGCAAAGTTCGTACATATCGTCAGTCGTTTTATTTCAAAAAACTGTGTGTAAGAAAATAACTCAACTTCATGTCAGGCAACGAAGACGCGGATACGAAAACCAATAAGTCAATCCAAAAGAATATTTGAATTTGAATAGAACATTCACGAACAGTCCTTGAATTG] consensusID : consensus_207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [TATTTGAGTGCAGTGGACCGAATCTTCCAAGTAATTAGATGTTCTTGATGTGTCCCTCAATTGATATTGCAATTGGTTTATGTAAATTATCAGTGATGGAGACTTTCTTACAAATCAGAATGTGAATATTCATCCTACAGATAATGCCTGAAAATTCTGCTATTATTCGAACAATCATTTGGTTTATTATTGGTATTATAACCAACAATTTATCTATCAGTATTCGTATTACAATTCAAGGAATGTTCGTGAATGTTCTATTCAAAATCAAATATTCTTTCAGATTGATT] [+] EMBL CD118641 [TATTTGAGTGCAGTGGACCGAATCTTCCAAGTAATTAGATGTTCTTGATGTGTCCCTCAATTGATATTGCAATTGGTTTATGTAAATTATCAGTGATGGAGACTTTCTTACAAATCAGAATGTGAATATTCATCCTACAGATAATGCCTGAAAATTCTGCTATTATTCGAACAATCATTTGGTTTATTATTGGTATTATAACCAACAATTTATCTATCAGTATTCGTATTACAATTCAAGGAATGTTCGTGAATGTTCTATTCAAAATCAAATATTCTTTCAGATTGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_207#0 TTTTGTCGAAAGAAAATGCAAAGCGTGGGGTATCAGAAATACCAAAGTTGATATCAACTA 60 consensus_207#1 ------------------------------TATTTGAG-TGCAGTGGACCGAATCTTCCA 29 *** ** * * * *** * * consensus_207#0 AAAGATTGATGCATTTCCGATCTCGATTCTTAAAATGTCCTCTCATTTTGCAATAGATGT 120 consensus_207#1 AGTAATT-AGATGTTCTTGATGT--GTCCCTCAATTGATATTGCAATT---GGTTTATGT 83 * *** * ** *** * * * * ** ** * ** ** * **** consensus_207#0 TAATCTTTTTACTATTTGTGAGTTATACAATAAGAAACAATGATATCTAAATATTTTATG 180 consensus_207#1 AAA--TTATCAGTGATGGAGACTT-TCTTACAAATCAGAATG-TGAATATTCATCCTACA 139 ** ** * * * * * ** ** * * ** * **** * ** ** ** consensus_207#0 CGAAATACTGTAATAATGTAACGCAAAGTTCGTACATATCGTCAGTCGTTTTATTTCAAA 240 consensus_207#1 GATAATGCCTGAAAATTCTGCTATTA--TTCGAACA----ATCATTTGGTTTATTATTGG 193 *** * ** * * * * **** *** *** * * ****** consensus_207#0 AAACTGTGTGTAAGAAAATAACT--CAAC-TTCATGTCAGGCAACGAAGACGCGGATACG 297 consensus_207#1 TA-TTATAACCAACAATTTATCTATCAGTATTCGTATTACAATTCAAGGA---ATGTTCG 249 * * * ** ** ** ** ** *** * * * * * ** * ** consensus_207#0 AAAACCAATAAGTCAATCCAAAAGAATATTTGAATTTGAATAGAACATTCACGAACAGTC 357 consensus_207#1 TGAATGTTCTATTCAAAATCAAATATTCTTTCAGATTGATT------------------- 290 ** * **** *** * * *** * **** * consensus_207#0 CTTGAATTG 366 consensus_207#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||