cluster # 2093

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2093 cluster # 2093 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2093#0 length = 506 sequences # 1

consensus_2093#1 length = 332 sequences # 1

consensusID : consensus_2093#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAAATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAAGTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAAAAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACGTTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGAAAATGACAAAACCAAGAGAAACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAATAATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAA]

[+] EMBL CD132796             [CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAAATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAAGTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAAAAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACGTTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGAAAATGACAAAACCAAGAGAAACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAATAATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAA]




>consensus_2093#0
CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAA
ATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAA
GTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAA
AAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACG
TTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGA
AAATGACAAAACCAAGAGAAACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAATA
ATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATA
TGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGAAT
ATAGGTCGATAGGGAAAGAGAAAAAA

consensusID : consensus_2093#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence

                              [TACTAGTCCCACGAACCATCACTATTATTGACGGTGTCCTCGACATGGGTATCACGCCAGAGACAGCACATATGATAGCTGCCTATAGATAGCTGATGGCACTACCCAGGAGATCACTGAGGAGCAAGAGGGTCAAATCACAAGTAACAATAATACTATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTANATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAAAGAGTTGAGAAAAATTGGAACTTGTTCAATT]

[+] EMBL CD198297             [TACTAGTCCCACGAACCATCACTATTATTGACGGTGTCCTCGACATGGGTATCACGCCAGAGACAGCACATATGATAGCTGCCTATAGATAGCTGATGGCACTACCCAGGAGATCACTGAGGAGCAAGAGGGTCAAATCACAAGTAACAATAATACTATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCATGTATTANATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAAAAGAGTTGAGAAAAATTGGAACTTGTTCAATT]




>consensus_2093#1
TACTAGTCCCACGAACCATCACTATTATTGACGGTGTCCTCGACATGGGTATCACGCCAG
AGACAGCACATATGATAGCTGCCTATAGATAGCTGATGGCACTACCCAGGAGATCACTGA
GGAGCAAGAGGGTCAAATCACAAGTAACAATAATACTATGAGATCGTTTTTCATCCAATA
ACTCTTGTTTTCGATAAAAAATAAATTATGTTATATGGCAAGACCTATTAGATTCAAGCA
TGTATTANATTACTAACGTAAATAGAGAAATGAATATAGGTCGATAGGGAAAGAGAAAAA
AAGAGTTGAGAAAAATTGGAACTTGTTCAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2093#0      CGAATAATAATGTTACGATTTAATCAAACAAAATTATGTGACCATTTAAAATTTTAGAAA 60
consensus_2093#1      ------------------------------------------------------------
                                                                                  

consensus_2093#0      ATTAATGTAACGTACATAAATGAAACGGAATTTGGTCCATATGTGTATTTTTTATCAAAA 120
consensus_2093#1      ------------------------------------------------------------
                                                                                  

consensus_2093#0      GTATTTGTAACAAAAAAAGGAAAATAGATCATTGAACTAAAGAAACAAGAAATATGATAA 180
consensus_2093#1      ------------------------------------------------------------
                                                                                  

consensus_2093#0      AAAGAGGAAAACAGTGACATAAACAATTACTAATCCCACTAACCATTACTATTATTGACG 240
consensus_2093#1      ---------------------------TACTAGTCCCACGAACCATCACTATTATTGACG 33
                                                 ***** ****** ****** *************

consensus_2093#0      TTGTCATCGTCATGGCTATCACACCACAGTTAGCAGAAATGATAGCTAACAATACATAGA 300
consensus_2093#1      GTGTCCTCGACATGGGTATCACGCCAGAGACAGCACATATGATAGCTGCCTATAGATAGC 93
                       **** *** ***** ****** *** **  **** * *********  * *** **** 

consensus_2093#0      AAATGACAAAACCAAGAGAA--ACTAAAGAACAAGAGGATCAAATCACAAGTAACAATAA 358
consensus_2093#1      TGATGGCACTACCCAGGAGATCACTGAGGAGCAAGAGGGTCAAATCACAAGTAACAATAA 153
                        *** **  *** **   *  *** * ** ******* *********************

consensus_2093#0      TAATATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTA 418
consensus_2093#1      TACTATGAGATCGTTTTTCATCCAATAACTCTTGTTTTCGATAAAAAATAAATTATGTTA 213
                      ** *********************************************************

consensus_2093#0      TATGGCAAGACCTATTAGATTCAAGCATGTATTAAATTACTAACGTAAATAGAGAAATGA 478
consensus_2093#1      TATGGCAAGACCTATTAGATTCAAGCATGTATTANATTACTAACGTAAATAGAGAAATGA 273
                      ********************************** *************************

consensus_2093#0      ATATAGGTCGATAGGGAAAGAGAAAAAA------------------------------- 506
consensus_2093#1      ATATAGGTCGATAGGGAAAGAGAAAAAAAGAGTTGAGAAAAATTGGAACTTGTTCAATT 332
                      ****************************