These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [TACCAGCCGTGAAGATTAATTAACAGTAATAATATAATACAATAAAACAGGTGAATGAGATCGATTGGGTGTGTTCTGATTTAGTTTTTTTTCTTTCAAAATTTTTTCTCTCAGCTCACTGATGTACATGGAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAATGGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCTGTATTCTGCTCCCCAACCTTTTACAAAACTAACACGTATTGAACACATATGAGTTAGTGAAAAGACAGATTCATAGCTACGTGACATATTATCAGCTAATTGACTAGCGAATGCTGTACTATCAAAAAGTTTTAAATTACACTCTGGTGGGACTTTGACAACAGTTGCTGGATGCCAACTGTAAAAACGATTACAACTTGGTGACTGAACAAAAACCGC] [+] EMBL CD146971 [TACCAGCCGTGAAGATTAATTAACAGTAATAATATAATACAATAAAACAGGTGAATGAGATCGATTGGGTGTGTTCTGATTTAGTTTTTTTTCTTTCAAAATTTTTTCTCTCAGCTCACTGATGTACATGGAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAATGGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCTGTATTCTGCTCCCCAACCTTTTACAAAACTAACACGTATTGAACACATATGAGTTAGTGAAAAGACAGATTCATAGCTACGTGACATATTATCAGCTAATTGACTAGCGAATGCTGTACTATCAAAAAGTTTTAAATTACACTCTGGTGGGACTTTGACAACAGTTGCTGGATGCCAACTGTAAAAACGATTACAACTTGGTGACTGAACAAAAACCGC] consensusID : consensus_2096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [GAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAATGGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCCAAATTAAATAATAAAAATGGTTTCTTGTTAACGTAAAAAAATATTAATCACTGATAAGAAAAAGAGGTGGGAATATAATTTTTGGACAAACCAATCAGAATTAAAGTATCAACTATTCTATTTTAGTGAGAAATTCATTTATCCATATGATTGACTGGCATTATAGCTGATGTCAATATTCATGATGAAAAGTTTAACTTTTATTCCAATTCTAAATTCCTGTTACCCCTCGTGGAGGAGCATACACCGACCACCACCATTCTCTATCCNACCCTGCCCTGGACAATCCTTCCCAGCTCTTTC] [+] EMBL CD187415 [GAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAATGGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCCAAATTAAATAATAAAAATGGTTTCTTGTTAACGTAAAAAAATATTAATCACTGATAAGAAAAAGAGGTGGGAATATAATTTTTGGACAAACCAATCAGAATTAAAGTATCAACTATTCTATTTTAGTGAGAAATTCATTTATCCATATGATTGACTGGCATTATAGCTGATGTCAATATTCATGATGAAAAGTTTAACTTTTATTCCAATTCTAAATTCCTGTTACCCCTCGTGGAGGAGCATACACCGACCACCACCATTCTCTATCCNACCCTGCCCTGGACAATCCTTCCCAGCTCTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2096#0 TACCAGCCGTGAAGATTAATTAACAGTAATAATATAATACAATAAAACAGGTGAATGAGA 60 consensus_2096#1 ------------------------------------------------------------ consensus_2096#0 TCGATTGGGTGTGTTCTGATTTAGTTTTTTTTCTTTCAAAATTTTTTCTCTCAGCTCACT 120 consensus_2096#1 ------------------------------------------------------------ consensus_2096#0 GATGTACATGGAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAAT 180 consensus_2096#1 ----------GAAGTGTTGGTGAACCCATTTGTCGAAGTACACGATCAAGCCATTTTAAT 50 ************************************************** consensus_2096#0 GGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCTGTAT 240 consensus_2096#1 GGTCCATTTAAATGTACTTCTATCCAACATGGTGTACTGGTTATTGTTTGTCTTCCAAAT 110 ******************************************************* ** consensus_2096#0 TCTGCTCCCCAA-----CCTTTTACAAAACTAACACGTATTGAACACATATGAGTTAGTG 295 consensus_2096#1 TAAATAATAAAAATGGTTTCTTGTTAACGTAAAAAAATATTAATCACTGATAAGAAA--- 167 * ** ** ** ** * **** * *** ** ** * consensus_2096#0 AAAAGACAGATTCATAGCTACGTGACATATTATCAGCTAATTGACTAGCGAATGCTGTAC 355 consensus_2096#1 AAGAGGTGGGAATATAATTTTTGGACAAACCAATCAGAATTAAAGTATCAACTATTCTAT 227 ** ** * *** * **** * * * * * ** * * * * ** consensus_2096#0 TATCAAAAAGTTTTAAATTACACTCTGGTGGGACTTTGACAACAGTTGCTGGATGCCAAC 415 consensus_2096#1 TTTAGTGAGAAATTCATTTATCCATATGATTGACTGGCATTATAGCTGATGT-CAATATT 286 * * * ** * *** * * **** * * ** ** ** * consensus_2096#0 TGTAAAAACGATTACAACTTGGTGACTGAACAAAAACCGC-------------------- 455 consensus_2096#1 CATGATGAAAAGTTTAACTTTTATTCCAATTCTAAATTCCTGTTACCCCTCGTGGAGGAG 346 * * * * * ***** * * *** * consensus_2096#0 ------------------------------------------------------------ consensus_2096#1 CATACACCGACCACCACCATTCTCTATCCNACCCTGCCCTGGACAATCCTTCCCAGCTCT 406 consensus_2096#0 --- consensus_2096#1 TTC 409 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||