cluster # 2098

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Schistosoma mansoni
cluster # 2098 cluster # 2098 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2098#0 length = 321 sequences # 1

consensus_2098#1 length = 306 sequences # 1

consensusID : consensus_2098#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence

                              [GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAACCGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCAACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGATTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATATAAACCGTTCACTTGACCTGTTGAATGAAACAGAAAATAGTTTCCTANAAGTACAGTCTTCTTTACATCTTGATAACTTTCA]

[+] EMBL CD196088             [GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAACCGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCAACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGATTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATATAAACCGTTCACTTGACCTGTTGAATGAAACAGAAAATAGTTTCCTANAAGTACAGTCTTCTTTACATCTTGATAACTTTCA]




>consensus_2098#0
GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAAC
CGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCA
ACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGA
TTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATAT
AAACCGTTCACTTGACCTGTTGAATGAAACAGAAAATAGTTTCCTANAAGTACAGTCTTC
TTTACATCTTGATAACTTTCA

consensusID : consensus_2098#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAACCGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCAACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGATTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATATAAACCGTTCACTTGACCTGTTGAATGAGACAGAATATAGTTTCCTATAACACTCCGAGTTTGAACT]

[+] EMBL CD196197             [GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAACCGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCAACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGATTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATATAAACCGTTCACTTGACCTGTTGAATGAGACAGAATATAGTTTCCTATAACACTCCGAGTTTGAACT]




>consensus_2098#1
GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAAC
CGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCA
ACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGA
TTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATAT
AAACCGTTCACTTGACCTGTTGAATGAGACAGAATATAGTTTCCTATAACACTCCGAGTT
TGAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2098#0      GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAAC 60
consensus_2098#1      GGGTTCGGCTCCTAAAGATTTAAACCGTCTCTATCCTCCTCTGGATGGACATTTCGCAAC 60
                      ************************************************************

consensus_2098#0      CGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCA 120
consensus_2098#1      CGATGTAGAAGGAAATCAATCAGCTGATCATGAAGCTGAATCGGTTGTTGAAGATATTCA 120
                      ************************************************************

consensus_2098#0      ACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGA 180
consensus_2098#1      ACAAAGCAAAGTTGAAGCTTCTGCACCAGACTTGTTCATGAACTCATCTGTCGAAGGAGA 180
                      ************************************************************

consensus_2098#0      TTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATAT 240
consensus_2098#1      TTTGTTATTTGATAGTTTCCCCCCTTCGCTTAGCTCGGAACATCTGAGGAACTTGTATAT 240
                      ************************************************************

consensus_2098#0      AAACCGTTCACTTGACCTGTTGAATGAAACAGAAAATAGTTTCCTANAAGTACAGTCTTC 300
consensus_2098#1      AAACCGTTCACTTGACCTGTTGAATGAGACAGAATATAGTTTCCTATAA---CACTCCGA 297
                      *************************** ****** *********** **   ** **   

consensus_2098#0      TTTACATCTTGATAACTTTCA 321
consensus_2098#1      GTTTGAACT------------ 306
                       **  * **