cluster # 2114

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Schistosoma mansoni
cluster # 2114 cluster # 2114 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2114#0 length = 327 sequences # 1

consensus_2114#1 length = 224 sequences # 1

consensusID : consensus_2114#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [CAATGTTATTATCTCCTTAAGATAGGTTTCATCATTTTGAGCAGAAGAGATCTCACTATGTTCATTCTTATCTCATTCTTTCTCTTTCCAGGGTATTTGCCTGTGTACTTGGAGGCTTGTACATAATGCTCCAACAGGTGTTTACATAGTTCTCGAATTTTTGGATGGTTCTTTTCATTTCGGTCAAGGTGTAATTTTATTTGTATTATTTGGTCTGGATGCAGATTTGTTTATTGCACCGATAAAACGTTTGTAAGTACAAAACTAAATTTAAACACCTTAACGCTTTCTATTTACTTGCTTAGTGACCCAAAATCATGGATTTTC]

[+] EMBL CD111270             [CAATGTTATTATCTCCTTAAGATAGGTTTCATCATTTTGAGCAGAAGAGATCTCACTATGTTCATTCTTATCTCATTCTTTCTCTTTCCAGGGTATTTGCCTGTGTACTTGGAGGCTTGTACATAATGCTCCAACAGGTGTTTACATAGTTCTCGAATTTTTGGATGGTTCTTTTCATTTCGGTCAAGGTGTAATTTTATTTGTATTATTTGGTCTGGATGCAGATTTGTTTATTGCACCGATAAAACGTTTGTAAGTACAAAACTAAATTTAAACACCTTAACGCTTTCTATTTACTTGCTTAGTGACCCAAAATCATGGATTTTC]




>consensus_2114#0
CAATGTTATTATCTCCTTAAGATAGGTTTCATCATTTTGAGCAGAAGAGATCTCACTATG
TTCATTCTTATCTCATTCTTTCTCTTTCCAGGGTATTTGCCTGTGTACTTGGAGGCTTGT
ACATAATGCTCCAACAGGTGTTTACATAGTTCTCGAATTTTTGGATGGTTCTTTTCATTT
CGGTCAAGGTGTAATTTTATTTGTATTATTTGGTCTGGATGCAGATTTGTTTATTGCACC
GATAAAACGTTTGTAAGTACAAAACTAAATTTAAACACCTTAACGCTTTCTATTTACTTG
CTTAGTGACCCAAAATCATGGATTTTC

consensusID : consensus_2114#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [AAATTTCTTTAGGGCTTGAGTTGGATAATGTTCATGCTCAAGGAAACAGTAAACCTCCACATCATAAACATGTGGTATTCCTAATATTAATATTAGTTACAATGTTTTTTGGTATTTGCCTGTGTACTTGGAGGCTTGTACATGATGCTCCAACAGGTGTTTACATAGTCCTCGAATTTTTGGATGGTTCTTTTCATTTCGTNCAAGGTGTAATTTTATTTGTA]

[-] EMBL CD063981             [AAATTTCTTTAGGGCTTGAGTTGGATAATGTTCATGCTCAAGGAAACAGTAAACCTCCACATCATAAACATGTGGTATTCCTAATATTAATATTAGTTACAATGTTTTTTGGTATTTGCCTGTGTACTTGGAGGCTTGTACATGATGCTCCAACAGGTGTTTACATAGTCCTCGAATTTTTGGATGGTTCTTTTCATTTCGTNCAAGGTGTAATTTTATTTGTA]




>consensus_2114#1
AAATTTCTTTAGGGCTTGAGTTGGATAATGTTCATGCTCAAGGAAACAGTAAACCTCCAC
ATCATAAACATGTGGTATTCCTAATATTAATATTAGTTACAATGTTTTTTGGTATTTGCC
TGTGTACTTGGAGGCTTGTACATGATGCTCCAACAGGTGTTTACATAGTCCTCGAATTTT
TGGATGGTTCTTTTCATTTCGTNCAAGGTGTAATTTTATTTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2114#0      -------------------------CAATGTTATTATCTCCTTAAG--ATAGGTTTCATC 33
consensus_2114#1      AAATTTCTTTAGGGCTTGAGTTGGATAATGTTCATGCTCAAGGAAACAGTAAACCTCCAC 60
                                                ******  *        **    **    **  *

consensus_2114#0      ATTTTGAGCAGAAGAGATCTCACTATGTTCATTCTTATCTCATTCTTTCTCTTTCCAGGG 93
consensus_2114#1      ATCATAAACATGTGGTAT-TCCTAATATTAATATTAGTTACAATGTTTTTT-------GG 112
                      **  * * **   *  ** **   ** ** **  *  *  ** * *** *        **

consensus_2114#0      TATTTGCCTGTGTACTTGGAGGCTTGTACATAATGCTCCAACAGGTGTTTACATAGTTCT 153
consensus_2114#1      TATTTGCCTGTGTACTTGGAGGCTTGTACATGATGCTCCAACAGGTGTTTACATAGTCCT 172
                      ******************************* ************************* **

consensus_2114#0      CGAATTTTTGGATGGTTCTTTTCATTTCGGTCAAGGTGTAATTTTATTTGTATTATTTGG 213
consensus_2114#1      CGAATTTTTGGATGGTTCTTTTCATTTCGTNCAAGGTGTAATTTTATTTGTA-------- 224
                      *****************************  *********************        

consensus_2114#0      TCTGGATGCAGATTTGTTTATTGCACCGATAAAACGTTTGTAAGTACAAAACTAAATTTA 273
consensus_2114#1      ------------------------------------------------------------
                                                                                  

consensus_2114#0      AACACCTTAACGCTTTCTATTTACTTGCTTAGTGACCCAAAATCATGGATTTTC 327
consensus_2114#1      ------------------------------------------------------