These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [CAATGTTATTATCTCCTTAAGATAGGTTTCATCATTTTGAGCAGAAGAGATCTCACTATGTTCATTCTTATCTCATTCTTTCTCTTTCCAGGGTATTTGCCTGTGTACTTGGAGGCTTGTACATAATGCTCCAACAGGTGTTTACATAGTTCTCGAATTTTTGGATGGTTCTTTTCATTTCGGTCAAGGTGTAATTTTATTTGTATTATTTGGTCTGGATGCAGATTTGTTTATTGCACCGATAAAACGTTTGTAAGTACAAAACTAAATTTAAACACCTTAACGCTTTCTATTTACTTGCTTAGTGACCCAAAATCATGGATTTTC] [+] EMBL CD111270 [CAATGTTATTATCTCCTTAAGATAGGTTTCATCATTTTGAGCAGAAGAGATCTCACTATGTTCATTCTTATCTCATTCTTTCTCTTTCCAGGGTATTTGCCTGTGTACTTGGAGGCTTGTACATAATGCTCCAACAGGTGTTTACATAGTTCTCGAATTTTTGGATGGTTCTTTTCATTTCGGTCAAGGTGTAATTTTATTTGTATTATTTGGTCTGGATGCAGATTTGTTTATTGCACCGATAAAACGTTTGTAAGTACAAAACTAAATTTAAACACCTTAACGCTTTCTATTTACTTGCTTAGTGACCCAAAATCATGGATTTTC] consensusID : consensus_2114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [AAATTTCTTTAGGGCTTGAGTTGGATAATGTTCATGCTCAAGGAAACAGTAAACCTCCACATCATAAACATGTGGTATTCCTAATATTAATATTAGTTACAATGTTTTTTGGTATTTGCCTGTGTACTTGGAGGCTTGTACATGATGCTCCAACAGGTGTTTACATAGTCCTCGAATTTTTGGATGGTTCTTTTCATTTCGTNCAAGGTGTAATTTTATTTGTA] [-] EMBL CD063981 [AAATTTCTTTAGGGCTTGAGTTGGATAATGTTCATGCTCAAGGAAACAGTAAACCTCCACATCATAAACATGTGGTATTCCTAATATTAATATTAGTTACAATGTTTTTTGGTATTTGCCTGTGTACTTGGAGGCTTGTACATGATGCTCCAACAGGTGTTTACATAGTCCTCGAATTTTTGGATGGTTCTTTTCATTTCGTNCAAGGTGTAATTTTATTTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2114#0 -------------------------CAATGTTATTATCTCCTTAAG--ATAGGTTTCATC 33 consensus_2114#1 AAATTTCTTTAGGGCTTGAGTTGGATAATGTTCATGCTCAAGGAAACAGTAAACCTCCAC 60 ****** * ** ** ** * consensus_2114#0 ATTTTGAGCAGAAGAGATCTCACTATGTTCATTCTTATCTCATTCTTTCTCTTTCCAGGG 93 consensus_2114#1 ATCATAAACATGTGGTAT-TCCTAATATTAATATTAGTTACAATGTTTTTT-------GG 112 ** * * ** * ** ** ** ** ** * * ** * *** * ** consensus_2114#0 TATTTGCCTGTGTACTTGGAGGCTTGTACATAATGCTCCAACAGGTGTTTACATAGTTCT 153 consensus_2114#1 TATTTGCCTGTGTACTTGGAGGCTTGTACATGATGCTCCAACAGGTGTTTACATAGTCCT 172 ******************************* ************************* ** consensus_2114#0 CGAATTTTTGGATGGTTCTTTTCATTTCGGTCAAGGTGTAATTTTATTTGTATTATTTGG 213 consensus_2114#1 CGAATTTTTGGATGGTTCTTTTCATTTCGTNCAAGGTGTAATTTTATTTGTA-------- 224 ***************************** ********************* consensus_2114#0 TCTGGATGCAGATTTGTTTATTGCACCGATAAAACGTTTGTAAGTACAAAACTAAATTTA 273 consensus_2114#1 ------------------------------------------------------------ consensus_2114#0 AACACCTTAACGCTTTCTATTTACTTGCTTAGTGACCCAAAATCATGGATTTTC 327 consensus_2114#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||