These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [CAATCATGTAGGTGATCTAAACCCATTTTATAATTATGCTTTTAAATATCACAGGTTCTAAGCATCTGATATGAACTAATGCAATGAAATGAATTCATGCTATTCTGCTAGAATCTTTATTCTTTCTCCTTTTAGAATGATAAATGGAACTATGTGTATGTCATTTTTGTTTATCTTTCACATAAGAGTTCGAAAGCTTTCGTTAACTGAGCACCATTCGTTTTCAGTGTTAAACGGTTTATCAAATCATGCAAAGTTTGTCAGTAATTCTTCGACATTCTTCCATGTTGAATAAGGCTATGAATCTGTTTTGCATCGTGTAGTCTTCACCATTAGTGGTTTTCTGTTTACTTTCTTTGTCTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTGGTAGATATTAGTCTCGTTTACATGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATATTTGTGAACTTGAATTTGACGTCGAATCGCGATTGACTATGATCACCGCTAGAGGGAGATTACGTGCCANATAT] [+] EMBL CD083029 [CAATCATGTAGGTGATCTAAACCCATTTTATAATTATGCTTTTAAATATCACAGGTTCTAAGCATCTGATATGAACTAATGCAATGAAATGAATTCATGCTATTCTGCTAGAATCTTTATTCTTTCTCCTTTTAGAATGATAAATGGAACTATGTGTATGTCATTTTTGTTTATCTTTCACATAAGAGTTCGAAAGCTTTCGTTAACTGAGCACCATTCGTTTTCAGTGTTAAACGGTTTATCAAATCATGCAAAGTTTGTCAGTAATTCTTCGACATTCTTCCATGTTGAATAAGGCTATGAATCTGTTTTGCATCGTGTAGTCTTCACCATTAGTGGTTTTCTGTTTACTTTCTTTGTCTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTGGTAGATATTAGTCTCGTTTACATGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATATTTGTGAACTTGAATTTGACGTCGAATCGCGATTGACTATGATCACCGCTAGAGGGAGATTACGTGCCANATAT] consensusID : consensus_2118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [GTCCGATCACCTGTTCTACCACTTCACTTTCTCACTTCCACCATTAGTGGTTTTCTGTTTACTTTCTTTGTCTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTGGTAGATATTAGTCTCGTTTACGTGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATATTTGTGAA] [+] EMBL CD064011 [GTCCGATCACCTGTTCTACCACTTCACTTTCTCACTTCCACCATTAGTGGTTTTCTGTTTACTTTCTTTGTCTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTGGTAGATATTAGTCTCGTTTACGTGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATATTTGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2118#0 CAATCATGTAGGTGATCTAAACCCATTTTATAATTATGCTTTTAAATATCACAGGTTCTA 60 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 AGCATCTGATATGAACTAATGCAATGAAATGAATTCATGCTATTCTGCTAGAATCTTTAT 120 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 TCTTTCTCCTTTTAGAATGATAAATGGAACTATGTGTATGTCATTTTTGTTTATCTTTCA 180 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 CATAAGAGTTCGAAAGCTTTCGTTAACTGAGCACCATTCGTTTTCAGTGTTAAACGGTTT 240 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 ATCAAATCATGCAAAGTTTGTCAGTAATTCTTCGACATTCTTCCATGTTGAATAAGGCTA 300 consensus_2118#1 ----------------------------------------------GTCCGATCAC-CTG 13 ** ** * ** consensus_2118#0 TGAATCTGTTTTGCATCGTGTAGTCTTCACCATTAGTGGTTTTCTGTTTACTTTCTTTGT 360 consensus_2118#1 TTCTACCACTT--CACTTTCTCACTTCCACCATTAGTGGTTTTCTGTTTACTTTCTTTGT 71 * * ** ** * * * ********************************* consensus_2118#0 CTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTG 420 consensus_2118#1 CTCAGTCAGTACTTTGGTTAGACTGAATCTATAATGCTATGTGTTTATACTAATTTACTG 131 ************************************************************ consensus_2118#0 GTAGATATTAGTCTCGTTTACATGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATAT 480 consensus_2118#1 GTAGATATTAGTCTCGTTTACGTGGAAGGTGAAAGGATTTCAAAATGGAATAATAAATAT 191 ********************* ************************************** consensus_2118#0 TTGTGAACTTGAATTTGACGTCGAATCGCGATTGACTATGATCACCGCTAGAGGGAGATT 540 consensus_2118#1 TTGTGAA----------------------------------------------------- 198 ******* consensus_2118#0 ACGTGCCANATAT 553 consensus_2118#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||