These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [AAACAAAAGGACAATAATTAGAAGCTGATTACAATAAAACTCAAACGAGATGAGTTTCTTGTGTTATGTAAATCAAGTAAAATGATTTCATACAATGTGTATAAGGGAAAACAAACCAAATTATAGGGTTTGACTCAATTCTTATAAATAAAGAGAATTTAACATTTTGGTAGAGCGTATGTCGGCTATACTGAATGTATGAAAAAAAGTNGTTACACGNCTACACGATATATTCTTACTTTTTGGGACAGGCGAATTATTCTAACCATCTCAAGTTATTTTGGGGCATCCCATACAATGTTGAACCTTGGAGAAAAGTGGTTGTTTTNAANTCTTTAAATGNAATAACAAGCTCTTGGCGGGGGGGTCCCNCCNAGGAGGTCCGGCCCCGGNCAG] [+] EMBL SMRAP171 [AAACAAAAGGACAATAATTAGAAGCTGATTACAATAAAACTCAAACGAGATGAGTTTCTTGTGTTATGTAAATCAAGTAAAATGATTTCATACAATGTGTATAAGGGAAAACAAACCAAATTATAGGGTTTGACTCAATTCTTATAAATAAAGAGAATTTAACATTTTGGTAGAGCGTATGTCGGCTATACTGAATGTATGAAAAAAAGTNGTTACACGNCTACACGATATATTCTTACTTTTTGGGACAGGCGAATTATTCTAACCATCTCAAGTTATTTTGGGGCATCCCATACAATGTTGAACCTTGGAGAAAAGTGGTTGTTTTNAANTCTTTAAATGNAATAACAAGCTCTTGGCGGGGGGGTCCCNCCNAGGAGGTCCGGCCCCGGNCAG] consensusID : consensus_2129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [GAATTNACCATCCTGTAGNGCGTATGTCGGCTATACTGAATGTATGAAAAAAAGTTGTTACACGNCTACACGATATNTTCTTACTTTCGGCACAGGCCGACTTCATTCCTNACCCATCTCAGTCTATTNTCGGTCAATCTCANCACAANCCTGCACCCCTCNGACGAACACGTCGCTGGTCCTTTNACCTCCCTTTCNACTGCCATCAACCAAGGCCCC] [+] EMBL SMRAP147 [GAATTNACCATCCTGTAGNGCGTATGTCGGCTATACTGAATGTATGAAAAAAAGTTGTTACACGNCTACACGATATNTTCTTACTTTCGGCACAGGCCGACTTCATTCCTNACCCATCTCAGTCTATTNTCGGTCAATCTCANCACAANCCTGCACCCCTCNGACGAACACGTCGCTGGTCCTTTNACCTCCCTTTCNACTGCCATCAACCAAGGCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2129#0 AAACAAAAGGACAATAATTAGAAGCTGATTACAATAAAACTCAAACGAGATGAGTTTCTT 60 consensus_2129#1 ------------------------------------------------------------ consensus_2129#0 GTGTTATGTAAATCAAGTAAAATGATTTCATACAATGTGTATAAGGGAAAACAAACCAAA 120 consensus_2129#1 ------------------------------------------------------------ consensus_2129#0 TTATAGGGTTTGACTCAATTCTTATAAATAAAGAGAATTTAACATTTTGGTAGAGCGTAT 180 consensus_2129#1 ----------------------------------GAATTNACCATCCTG-TAGNGCGTAT 25 ***** * *** ** *** ****** consensus_2129#0 GTCGGCTATACTGAATGTATGAAAAAAAGTNGTTACACGNCTACACGATATATTCTTACT 240 consensus_2129#1 GTCGGCTATACTGAATGTATGAAAAAAAGTTGTTACACGNCTACACGATATNTTCTTACT 85 ****************************** ******************** ******** consensus_2129#0 TTTTGGGACAGGCGAATT--ATTC--TAACCATCTCAAGTTATTTTGGGGCA-TCCCAT- 294 consensus_2129#1 TTC-GGCACAGGCCGACTTCATTCCTNACCCATCTCAGTCTATTNTCGGTCAATCTCANC 144 ** ** ****** * * **** * ******** **** * ** ** ** ** consensus_2129#0 ACAATGTTGAACCTTGGAGAAAAGTGGTTGTTTTNAANTCTTTAAATGNAATAACAAGCT 354 consensus_2129#1 ACAANCCTGCACCCCTCNGACGAACA--CGTCGCTGGTCCTTTNACCTCCCTTTCNA-CT 201 **** ** *** ** * ** **** * * * * ** consensus_2129#0 CTTGGCGGGGGGGTCCCNCCNAGGAGGTCCGGCCCCGGNCAG 396 consensus_2129#1 GCCATCAACCAAGGCCCC------------------------ 219 * * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||